C5WZQ4 (C5WZQ4_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb01g035090 EMBL EER92258.1

Gene names

Name:	Sb01g035090 EMBL EER92258.1
ORF Names:	SORBIDRAFT_01g035090 EMBL EER92258.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	226 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L6P family. RuleBase RU003869

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003869
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5WZQ4 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: C1287D7AD72A00A9	FASTA	226	24,845
	10 20 30 40 50 60 MASLSPSLHL PCNSRTGFLG KTHGIRPRVL PAGRVGFVRT VVECKESRIG KQPIEVPSNV 70 80 90 100 110 120 TLTLEEQFVK AKGPLGELSL SFPGDVKIVK EESGMLRVYK TAETKRANQM HGLFRTLTDN 130 140 150 160 170 180 IIVGVSKGFD KKLQLVGVGY RAAVEGNDLV MNLGFSHPVR MAIPEGLAVK VEENTRITVS 190 200 210 220 GYDKSAIGQF AATIKKWRPP EPYKGKGIRY MDEVVRRKEG KAGKKK

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000760 Genomic DNA. Translation: EER92258.1.
RefSeq	XP_002465260.1. XM_002465215.1.
UniGene	Sbi.3728.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C5WZQ4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb01g035090.1; Sb01g035090.1; Sb01g035090.
GeneID	8080817.
KEGG	sbi:SORBI_01g035090.
Phylogenomic databases
GeneTree	EPGT00050000014568.
OMA	KRRPEPY.
PhylomeDB	C5WZQ4.
ProtClustDB	CLSN2681987.
Family and domain databases
HAMAP	MF_01365_B. Ribosomal_L6_B. [Tree]
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR019906. Ribosomal_L6_bac-type. IPR002358. Ribosomal_L6_CS. [Graphical view]
Gene3D	G3DSA:3.90.930.12. Ribosomal_L6. 2 hits.
KO	K02933.
PANTHER	PTHR11655. Ribosomal_L6. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
PRINTS	PR00059. RIBOSOMALL6.
SUPFAM	SSF56053. Ribosomal_L6. 2 hits.
TIGRFAMs	TIGR03654. L6_bact. 1 hit.
PROSITE	PS00525. RIBOSOMAL_L6_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5WZQ4_SORBI

Accession

Primary (citable) accession number: C5WZQ4

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)