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C5WXG6 (C5WXG6_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
Name:Sb01g018700 EMBL EER91453.1
ORF Names:SORBIDRAFT_01g018700 EMBL EER91453.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length905 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
C5WXG6 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: CB81BA388CDDC4B5

FASTA90598,234
        10         20         30         40         50         60 
MFLLRATSSS TTTATSSLLL RCRPLPSPKT LALAPPPTIL PFCFRSRLSA SASSASRRRR 

        70         80         90        100        110        120 
ATAAAAAGKS GEKKPPTARA KQADAGPAAA AAAGMSASGG GSSGKRTVAD VLMGNARAAA 

       130        140        150        160        170        180 
SKAKKAAPSP KKPRAKADGA EAELEAAAVA EKPPSPVRSK RASSPAKSPK LLADGSTSPA 

       190        200        210        220        230        240 
KSKGPAAAAQ LDAAKENSPS PKRSKTLAAK SDTQPSGEGV VSHTDGKKGS PAPTKAKGQA 

       250        260        270        280        290        300 
SQQEEKKRAT SPKKAKTTDS DSAKTEEKNT TRATSPKKAK TTDSRKAEEK NTTLELKKKG 

       310        320        330        340        350        360 
SEFDPMAAAY WKPGEPVPFL FLARALDLIS NESGRIVITE ILSNVFRTVM ATTPDDLLAT 

       370        380        390        400        410        420 
VYLSANRIAP PHEGIELGIG DASVIRALAE AYGRKEEHVK KDLKELGDLG LVAKASRSSQ 

       430        440        450        460        470        480 
KMMFKPKPLT IARVLSTFRA IAKESGKDSQ DKKRNHMKGL LVAATDCEPQ YITRLLQSKM 

       490        500        510        520        530        540 
RIGLAEKTVQ MALGQAAVYS DKNSSPPKVQ SPFEEAAKII KQAYSVLPIY DKIVPAILEV 

       550        560        570        580        590        600 
GVWKLPETCK FSIGVPVGPM LAKATKSVSE IIDKFQGLEY TCEYKYDGER AQIHCMEDGS 

       610        620        630        640        650        660 
VEIYSRNAER NTGKYPDVVD AVSRFRKPTV KSFVLDCEIV AYDREKQKIL PFQILSTRAR 

       670        680        690        700        710        720 
KGVTINDIKV SVCTFGFDIL YINGKPLLQE QLKIRREHLY NSFEEVPGVF QLATAITSND 

       730        740        750        760        770        780 
LEEIQKFLDT AVNSSCEGLI IKTLDKDATY EPAKRSNNWL KLKKDYMDSI GDSLDLVPIA 

       790        800        810        820        830        840 
AFYGRGKRTG VFGSFLLACY DEQNEEYQTI CNIGTGFSEQ QLEERSASLR SKVIEKPKAY 

       850        860        870        880        890        900 
YRFADTMDPD VWFEPSEVWE VKAADLSISP VHRAANGIVD PNKVADMYRS QKINHGYNQE 


DEDDD 

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000760 Genomic DNA. Translation: EER91453.1.
RefSeqXP_002464455.1. XM_002464410.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb01g018700.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb01g018700.1; Sb01g018700.1; Sb01g018700.
GeneID8067120.
KEGGsbi:SORBI_01g018700.

Organism-specific databases

GrameneC5WXG6.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036006.
KOK10747.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5WXG6_SORBI
AccessionPrimary (citable) accession number: C5WXG6
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)