SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C5WXG6

- C5WXG6_SORBI

UniProt

C5WXG6 - C5WXG6_SORBI

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
DNA ligase
Gene
Sb01g018700, SORBIDRAFT_01g018700
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
  4. double-strand break repair Source: EnsemblPlants/Gramene
  5. single strand break repair Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:Sb01g018700Imported
ORF Names:SORBIDRAFT_01g018700Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 1

Organism-specific databases

GrameneiC5WXG6.

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb01g018700.1.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036006.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5WXG6-1 [UniParc]FASTAAdd to Basket

« Hide

MFLLRATSSS TTTATSSLLL RCRPLPSPKT LALAPPPTIL PFCFRSRLSA    50
SASSASRRRR ATAAAAAGKS GEKKPPTARA KQADAGPAAA AAAGMSASGG 100
GSSGKRTVAD VLMGNARAAA SKAKKAAPSP KKPRAKADGA EAELEAAAVA 150
EKPPSPVRSK RASSPAKSPK LLADGSTSPA KSKGPAAAAQ LDAAKENSPS 200
PKRSKTLAAK SDTQPSGEGV VSHTDGKKGS PAPTKAKGQA SQQEEKKRAT 250
SPKKAKTTDS DSAKTEEKNT TRATSPKKAK TTDSRKAEEK NTTLELKKKG 300
SEFDPMAAAY WKPGEPVPFL FLARALDLIS NESGRIVITE ILSNVFRTVM 350
ATTPDDLLAT VYLSANRIAP PHEGIELGIG DASVIRALAE AYGRKEEHVK 400
KDLKELGDLG LVAKASRSSQ KMMFKPKPLT IARVLSTFRA IAKESGKDSQ 450
DKKRNHMKGL LVAATDCEPQ YITRLLQSKM RIGLAEKTVQ MALGQAAVYS 500
DKNSSPPKVQ SPFEEAAKII KQAYSVLPIY DKIVPAILEV GVWKLPETCK 550
FSIGVPVGPM LAKATKSVSE IIDKFQGLEY TCEYKYDGER AQIHCMEDGS 600
VEIYSRNAER NTGKYPDVVD AVSRFRKPTV KSFVLDCEIV AYDREKQKIL 650
PFQILSTRAR KGVTINDIKV SVCTFGFDIL YINGKPLLQE QLKIRREHLY 700
NSFEEVPGVF QLATAITSND LEEIQKFLDT AVNSSCEGLI IKTLDKDATY 750
EPAKRSNNWL KLKKDYMDSI GDSLDLVPIA AFYGRGKRTG VFGSFLLACY 800
DEQNEEYQTI CNIGTGFSEQ QLEERSASLR SKVIEKPKAY YRFADTMDPD 850
VWFEPSEVWE VKAADLSISP VHRAANGIVD PNKVADMYRS QKINHGYNQE 900
DEDDD 905
Length:905
Mass (Da):98,234
Last modified:September 1, 2009 - v1
Checksum:iCB81BA388CDDC4B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000760 Genomic DNA. Translation: EER91453.1.
RefSeqiXP_002464455.1. XM_002464410.1.

Genome annotation databases

EnsemblPlantsiSb01g018700.1; Sb01g018700.1; Sb01g018700.
GeneIDi8067120.
KEGGisbi:SORBI_01g018700.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000760 Genomic DNA. Translation: EER91453.1 .
RefSeqi XP_002464455.1. XM_002464410.1.

3D structure databases

ModBasei Search...

Protein-protein interaction databases

STRINGi 4558.Sb01g018700.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb01g018700.1 ; Sb01g018700.1 ; Sb01g018700 .
GeneIDi 8067120.
KEGGi sbi:SORBI_01g018700.

Organism-specific databases

Gramenei C5WXG6.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036006.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiC5WXG6_SORBI
AccessioniPrimary (citable) accession number: C5WXG6
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi