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C5WXG6

- C5WXG6_SORBI

UniProt

C5WXG6 - C5WXG6_SORBI

Protein

DNA ligase

Gene

Sb01g018700

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW
    4. double-strand break repair Source: EnsemblPlants/Gramene
    5. single strand break repair Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Name:Sb01g018700Imported
    ORF Names:SORBIDRAFT_01g018700Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 1

    Organism-specific databases

    GrameneiC5WXG6.

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb01g018700.1.

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036006.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C5WXG6-1 [UniParc]FASTAAdd to Basket

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    MFLLRATSSS TTTATSSLLL RCRPLPSPKT LALAPPPTIL PFCFRSRLSA    50
    SASSASRRRR ATAAAAAGKS GEKKPPTARA KQADAGPAAA AAAGMSASGG 100
    GSSGKRTVAD VLMGNARAAA SKAKKAAPSP KKPRAKADGA EAELEAAAVA 150
    EKPPSPVRSK RASSPAKSPK LLADGSTSPA KSKGPAAAAQ LDAAKENSPS 200
    PKRSKTLAAK SDTQPSGEGV VSHTDGKKGS PAPTKAKGQA SQQEEKKRAT 250
    SPKKAKTTDS DSAKTEEKNT TRATSPKKAK TTDSRKAEEK NTTLELKKKG 300
    SEFDPMAAAY WKPGEPVPFL FLARALDLIS NESGRIVITE ILSNVFRTVM 350
    ATTPDDLLAT VYLSANRIAP PHEGIELGIG DASVIRALAE AYGRKEEHVK 400
    KDLKELGDLG LVAKASRSSQ KMMFKPKPLT IARVLSTFRA IAKESGKDSQ 450
    DKKRNHMKGL LVAATDCEPQ YITRLLQSKM RIGLAEKTVQ MALGQAAVYS 500
    DKNSSPPKVQ SPFEEAAKII KQAYSVLPIY DKIVPAILEV GVWKLPETCK 550
    FSIGVPVGPM LAKATKSVSE IIDKFQGLEY TCEYKYDGER AQIHCMEDGS 600
    VEIYSRNAER NTGKYPDVVD AVSRFRKPTV KSFVLDCEIV AYDREKQKIL 650
    PFQILSTRAR KGVTINDIKV SVCTFGFDIL YINGKPLLQE QLKIRREHLY 700
    NSFEEVPGVF QLATAITSND LEEIQKFLDT AVNSSCEGLI IKTLDKDATY 750
    EPAKRSNNWL KLKKDYMDSI GDSLDLVPIA AFYGRGKRTG VFGSFLLACY 800
    DEQNEEYQTI CNIGTGFSEQ QLEERSASLR SKVIEKPKAY YRFADTMDPD 850
    VWFEPSEVWE VKAADLSISP VHRAANGIVD PNKVADMYRS QKINHGYNQE 900
    DEDDD 905
    Length:905
    Mass (Da):98,234
    Last modified:September 1, 2009 - v1
    Checksum:iCB81BA388CDDC4B5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000760 Genomic DNA. Translation: EER91453.1.
    RefSeqiXP_002464455.1. XM_002464410.1.

    Genome annotation databases

    EnsemblPlantsiSb01g018700.1; Sb01g018700.1; Sb01g018700.
    GeneIDi8067120.
    KEGGisbi:SORBI_01g018700.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000760 Genomic DNA. Translation: EER91453.1 .
    RefSeqi XP_002464455.1. XM_002464410.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb01g018700.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb01g018700.1 ; Sb01g018700.1 ; Sb01g018700 .
    GeneIDi 8067120.
    KEGGi sbi:SORBI_01g018700.

    Organism-specific databases

    Gramenei C5WXG6.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036006.
    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5WXG6_SORBI
    AccessioniPrimary (citable) accession number: C5WXG6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3