Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C5WXG6

- C5WXG6_SORBI

UniProt

C5WXG6 - C5WXG6_SORBI

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

DNA ligase

Gene

Sb01g018700

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:Sb01g018700Imported
ORF Names:SORBIDRAFT_01g018700Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 1

Organism-specific databases

GrameneiC5WXG6.

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb01g018700.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036006.
InParanoidiC5WXG6.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5WXG6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFLLRATSSS TTTATSSLLL RCRPLPSPKT LALAPPPTIL PFCFRSRLSA
60 70 80 90 100
SASSASRRRR ATAAAAAGKS GEKKPPTARA KQADAGPAAA AAAGMSASGG
110 120 130 140 150
GSSGKRTVAD VLMGNARAAA SKAKKAAPSP KKPRAKADGA EAELEAAAVA
160 170 180 190 200
EKPPSPVRSK RASSPAKSPK LLADGSTSPA KSKGPAAAAQ LDAAKENSPS
210 220 230 240 250
PKRSKTLAAK SDTQPSGEGV VSHTDGKKGS PAPTKAKGQA SQQEEKKRAT
260 270 280 290 300
SPKKAKTTDS DSAKTEEKNT TRATSPKKAK TTDSRKAEEK NTTLELKKKG
310 320 330 340 350
SEFDPMAAAY WKPGEPVPFL FLARALDLIS NESGRIVITE ILSNVFRTVM
360 370 380 390 400
ATTPDDLLAT VYLSANRIAP PHEGIELGIG DASVIRALAE AYGRKEEHVK
410 420 430 440 450
KDLKELGDLG LVAKASRSSQ KMMFKPKPLT IARVLSTFRA IAKESGKDSQ
460 470 480 490 500
DKKRNHMKGL LVAATDCEPQ YITRLLQSKM RIGLAEKTVQ MALGQAAVYS
510 520 530 540 550
DKNSSPPKVQ SPFEEAAKII KQAYSVLPIY DKIVPAILEV GVWKLPETCK
560 570 580 590 600
FSIGVPVGPM LAKATKSVSE IIDKFQGLEY TCEYKYDGER AQIHCMEDGS
610 620 630 640 650
VEIYSRNAER NTGKYPDVVD AVSRFRKPTV KSFVLDCEIV AYDREKQKIL
660 670 680 690 700
PFQILSTRAR KGVTINDIKV SVCTFGFDIL YINGKPLLQE QLKIRREHLY
710 720 730 740 750
NSFEEVPGVF QLATAITSND LEEIQKFLDT AVNSSCEGLI IKTLDKDATY
760 770 780 790 800
EPAKRSNNWL KLKKDYMDSI GDSLDLVPIA AFYGRGKRTG VFGSFLLACY
810 820 830 840 850
DEQNEEYQTI CNIGTGFSEQ QLEERSASLR SKVIEKPKAY YRFADTMDPD
860 870 880 890 900
VWFEPSEVWE VKAADLSISP VHRAANGIVD PNKVADMYRS QKINHGYNQE

DEDDD
Length:905
Mass (Da):98,234
Last modified:September 1, 2009 - v1
Checksum:iCB81BA388CDDC4B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000760 Genomic DNA. Translation: EER91453.1.
RefSeqiXP_002464455.1. XM_002464410.1.

Genome annotation databases

EnsemblPlantsiSb01g018700.1; Sb01g018700.1; Sb01g018700.
GeneIDi8067120.
KEGGisbi:SORBI_01g018700.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000760 Genomic DNA. Translation: EER91453.1 .
RefSeqi XP_002464455.1. XM_002464410.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb01g018700.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb01g018700.1 ; Sb01g018700.1 ; Sb01g018700 .
GeneIDi 8067120.
KEGGi sbi:SORBI_01g018700.

Organism-specific databases

Gramenei C5WXG6.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036006.
InParanoidi C5WXG6.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5WXG6_SORBI
AccessioniPrimary (citable) accession number: C5WXG6
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 29, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3