C5WWF1 (C5WWF1_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Glutamyl-tRNA reductase RuleBase RU000584
EC=1.2.1.70 RuleBase RU000584

Gene names

Name:	Sb01g017860 EMBL EER91419.1
ORF Names:	SORBIDRAFT_01g017860 EMBL EER91419.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	534 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-glutamate 1-semialdehyde + NADP+ + tRNA(Glu) = L-glutamyl-tRNA(Glu) + NADPH. RuleBase RU000584
Pathway	Porphyrin metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2. RuleBase RU000584
Sequence similarities	Belongs to the glutamyl-tRNA reductase family. RuleBase RU000584

Ontologies

Keywords
Biological process	Porphyrin biosynthesis RuleBase RU000584
Ligand	NADP RuleBase RU000584
Molecular function	Oxidoreductase RuleBase RU000584
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	NADP binding Inferred from electronic annotation. Source: InterPro glutamyl-tRNA reductase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5WWF1 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 5FD7CD324D2347CE	FASTA	534	58,224
	10 20 30 40 50 60 MMASTASATA AAAAAAFGAA AKPRGSSSAP CARVAAGGRR RSGVVVRCDA GVEAQVQAVA 70 80 90 100 110 120 KAASIAALEQ FKISADRYMK ERSSIAVIGL SVHTAPVEMR EKLAVAEELW PRAIQELTSL 130 140 150 160 170 180 NHIEEAAVLS TCNRMEIYVV ALSWNRGIRE VVDWMSKKSG IPASELREHL FMLRDSDATR 190 200 210 220 230 240 HLFEVSAGLD SLVLGEGQIL AQVKQVVRSG QNSGGLGKNI DRMFKDAITA GKRVRSETNI 250 260 270 280 290 300 SSGAVSVSSA AVELALMKLP KSEALSARML LIGAGKMGKL VIKHLIAKGC KKVVVVNRSV 310 320 330 340 350 360 ERVDAIREET KDIEIVYRPL SEMYEAAAEA DVVFTSTASE TPLFTKEHAD ALPTISDAMG 370 380 390 400 410 420 GVRLFIDISV PRNVSACVSE IGSARVYNVD DLKEVVEANK EDRLRKAMEA QTIITEELKR 430 440 450 460 470 480 FEAWRDSLET VPTIKKLRSY ADRIRASELE KCLQKIGDDV LTKKMRRAIE ELSTGIVNKL 490 500 510 520 530 LHGPLQHLRC DGSNSRTLDE TLENMHALNR MFSLDTEKAI IEQKIKAKVE KTQN

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000760 Genomic DNA. Translation: EER91419.1.
RefSeq	XP_002464421.1. XM_002464376.1.
UniGene	Sbi.3274.
3D structure databases
ProteinModelPortal	C5WWF1.
ModBase	Search...
Protein-protein interaction databases
STRING	C5WWF1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb01g017860.1; Sb01g017860.1; Sb01g017860.
GeneID	8067086.
KEGG	sbi:SORBI_01g017860.
Phylogenomic databases
GeneTree	EPGT00050000012703.
OMA	IRENEIC.
PhylomeDB	C5WWF1.
ProtClustDB	PLN00203.
Family and domain databases
HAMAP	MF_00087. Glu_tRNA_reductase. [Tree]
InterPro	IPR000343. 4pyrrol_synth_GluRdtase. IPR015896. 4pyrrol_synth_GluRdtase_dimer. IPR015895. 4pyrrol_synth_GluRdtase_N. IPR016040. NAD(P)-bd_dom. IPR018214. Pyrrol_synth_GluRdtase_CS. IPR006151. Shikm_DH/Glu-tRNA_Rdtase. [Graphical view]
Gene3D	G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
KO	K02492.
Pfam	PF00745. GlutR_dimer. 1 hit. PF05201. GlutR_N. 1 hit. PF01488. Shikimate_DH. 1 hit. [Graphical view]
PIRSF	PIRSF000445. 4pyrrol_synth_GluRdtase. 1 hit.
SUPFAM	SSF69075. 4pyrrol_synth_GluRdtase_C. 1 hit. SSF69742. GlutR. 1 hit.
TIGRFAMs	TIGR01035. HemA. 1 hit.
PROSITE	PS00747. GLUTR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5WWF1_SORBI

Accession

Primary (citable) accession number: C5WWF1

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)