C5WV31 (C5WV31_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb01g003400 EMBL EER93202.1

Gene names

Name:	Sb01g003400 EMBL EER93202.1
ORF Names:	SORBIDRAFT_01g003400 EMBL EER93202.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	432 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS016177
Cellular component	Nucleus SAAS SAAS016177
Ligand	DNA-binding SAAS SAAS016177
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5WV31 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 3918F088BDDB1F8D	FASTA	432	47,484
	10 20 30 40 50 60 MVLDLNVASP ADSGTSSSSV LNSANGGFRF GLLGSPVDDD DCSGEMAPGA STGFMTRQLF 70 80 90 100 110 120 PSPTPPAEPE PEPPAAPVPV WQPRRAEDLG VAQRPVAPAK KTRRGPRSRS SQYRGVTFYR 130 140 150 160 170 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LEADINFSLG DYEDDLKQMR 190 200 210 220 230 240 NWTKEEFVHI LRRQSTGFAR GSSKYRGVTL HKCGRWEARM GQLLGKKYIY LGLFDSEVEA 250 260 270 280 290 300 ARAYDRAALR FNGREAVTNF EPSSYNAGDN SLPDTETEAI VDRDAIDLDL RISQPNVQDP 310 320 330 340 350 360 KRDYTLTSLQ PTCDSPESSN TMASQPMSSS SPWPGYQQNP AVSSHHQHLY SSACHGSFPN 370 380 390 400 410 420 HQVQERPMER RPELGAQPFP TWAWQTQGSP HVPLHHSAAS SGFSTAAGAN GGMPLPSHPP 430 APFPTTNPFF FP

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000760 Genomic DNA. Translation: EER93202.1.
RefSeq	XP_002466204.1. XM_002466159.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb01g003400.1; Sb01g003400.1; Sb01g003400.
GeneID	8057377.
KEGG	sbi:SORBI_01g003400.
Phylogenomic databases
GeneTree	EPGT00070000028338.
OMA	LYSSACH.
PhylomeDB	C5WV31.
ProtClustDB	CLSN2694464.
Family and domain databases
InterPro	IPR016177. DNA-bd_integrase-typ. IPR001471. TF_ERF_DNA-bd. [Graphical view]
Gene3D	G3DSA:3.30.730.10. TF_ERF. 2 hits.
Pfam	PF00847. AP2. 2 hits. [Graphical view]
PRINTS	PR00367. ETHRSPELEMNT.
SMART	SM00380. AP2. 2 hits. [Graphical view]
SUPFAM	SSF54171. DNA-binding_integrase-type. 2 hits.
PROSITE	PS51032. AP2_ERF. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5WV31_SORBI

Accession

Primary (citable) accession number: C5WV31

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)