C5WSU5 (C5WSU5_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb01g043030 EMBL EER92649.1

Gene names

Name:	Sb01g043030 EMBL EER92649.1
ORF Names:	SORBIDRAFT_01g043030 EMBL EER92649.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	508 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 1 family. RuleBase RU003690

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5WSU5 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 99FF8CE320D3B8B9	FASTA	508	57,253
	10 20 30 40 50 60 MPPVVVLLLL LVVLGVSLQG RCTAQGGGGL TRGSFPKGFV FGTAAAAYQY EGAVTTDGRG 70 80 90 100 110 120 RTIWDTFAHT FGKISDFSNA DVAVDQYHRF EEDVQLMADM GMDAYRFSIA WSRILPNGTG 130 140 150 160 170 180 QVNQAGIDHY NKVINALLSK GIQPYVTLYH WDLPQALEDR YNGWLDRQIV NDFAAYAETC 190 200 210 220 230 240 FKAFGDRVKH WITLNEPHTV AIQGYDAGLH APGRCSVLLH LYCKSGNSGT EPYIVAHNFI 250 260 270 280 290 300 LAHATVSDIY RRKYKAAQNG ELGIAFDVIW YEPMTNSTID IEATKRAQEF QLGWFAEPFF 310 320 330 340 350 360 FGDYPATMRT RVGERLPKFT ADEATLVKGA LDFMGINHYT TFYTRHNETN IIGRLLNDTL 370 380 390 400 410 420 ADTGTISLPF DKNGKPIGDR ANSIWLYIVP SGIRKLMNYV KERYNSPTVY ITENGMDDGN 430 440 450 460 470 480 SPFTSIQDAL KDKKRIKYHN DYLSNVAASI KEDGCDVRGY FAWSLLDNWE WAAGYSSRFG 490 500 LYFVDYKDNL KRYPKNSVQW FKTLLSSS

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000760 Genomic DNA. Translation: EER92649.1.
RefSeq	XP_002465651.1. XM_002465606.1.
3D structure databases
ProteinModelPortal	C5WSU5.
ModBase	Search...
Protein-protein interaction databases
STRING	C5WSU5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb01g043030.1; Sb01g043030.1; Sb01g043030.
GeneID	8054201.
KEGG	sbi:SORBI_01g043030.
Phylogenomic databases
GeneTree	EPGT00070000029074.
OMA	NDFAAYA.
PhylomeDB	C5WSU5.
ProtClustDB	CLSN2682658.
Family and domain databases
InterPro	IPR001360. Glyco_hydro_1. IPR018120. Glyco_hydro_1_AS. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KO	K01188.
PANTHER	PTHR10353. Glyco_hydro_1. 1 hit.
Pfam	PF00232. Glyco_hydro_1. 1 hit. [Graphical view]
PRINTS	PR00131. GLHYDRLASE1.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
PROSITE	PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5WSU5_SORBI

Accession

Primary (citable) accession number: C5WSU5

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)