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C5WRM9 (C5WRM9_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Sb01g041700 EMBL EER95206.1
ORF Names:SORBIDRAFT_01g041700 EMBL EER95206.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length490 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processglutamate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytosol

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

nucleus

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionglutamate decarboxylase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C5WRM9 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: B206D5C1BA2E3592

FASTA49055,681
        10         20         30         40         50         60 
MVLSKAVSES DMSVHSTFAS RYVRSSLPRY RMPENSIPKE AAYQIINDEL MLDGNPRLNL 

        70         80         90        100        110        120 
ASFVTTWMEP ECDKLIMAAI NKNYVDMDEY PVTTELQNRC VNMIAHLFNA PLGESETAVG 

       130        140        150        160        170        180 
VGTVGSSEAI MLAGLAFKRR WQNKRRAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELRE 

       190        200        210        220        230        240 
VKLRDGYYVM DPEKAVEMVD ENTICVAAIL GSTLNGEFED VKLLNDLLEV KNGETGWGTP 

       250        260        270        280        290        300 
IHVDAASGGF IAPFLYPELE WDFRLPWVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL 

       310        320        330        340        350        360 
IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRHGFEGY RNIMENCHEN AMVLKEGLEK 

       370        380        390        400        410        420 
TGRFNIVSKD EGVPLVAFSL KDRSRHDEFE ISDMLRRFGW IVPAYTMPAD AQHVTVLRVV 

       430        440        450        460        470        480 
IREEFSRTLA ERLVLDIEKV MYQLDALPSR IPPPPPPAQL VRKKSELETQ RSVTEAWKKF 

       490 
VLAKKTNGVC 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000760 Genomic DNA. Translation: EER95206.1.
RefSeqXP_002468208.1. XM_002468163.1.
UniGeneSbi.10791.

3D structure databases

ProteinModelPortalC5WRM9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb01g041700.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb01g041700.1; Sb01g041700.1; Sb01g041700.
GeneID8085236.
KEGGsbi:SORBI_01g041700.

Organism-specific databases

GrameneC5WRM9.

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAIMENCHE.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC5WRM9_SORBI
AccessionPrimary (citable) accession number: C5WRM9
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)