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Protein

Glutamate decarboxylase

Gene

Sb01g041700

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:Sb01g041700Imported
ORF Names:SORBIDRAFT_01g041700Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 1

Organism-specific databases

GrameneiC5WRM9.

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb01g041700.1.

Structurei

3D structure databases

ProteinModelPortaliC5WRM9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
InParanoidiC5WRM9.
KOiK01580.
OMAiLHEMPER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

C5WRM9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLSKAVSES DMSVHSTFAS RYVRSSLPRY RMPENSIPKE AAYQIINDEL
60 70 80 90 100
MLDGNPRLNL ASFVTTWMEP ECDKLIMAAI NKNYVDMDEY PVTTELQNRC
110 120 130 140 150
VNMIAHLFNA PLGESETAVG VGTVGSSEAI MLAGLAFKRR WQNKRRAEGK
160 170 180 190 200
PFDKPNIVTG ANVQVCWEKF ARYFEVELRE VKLRDGYYVM DPEKAVEMVD
210 220 230 240 250
ENTICVAAIL GSTLNGEFED VKLLNDLLEV KNGETGWGTP IHVDAASGGF
260 270 280 290 300
IAPFLYPELE WDFRLPWVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL
310 320 330 340 350
IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRHGFEGY RNIMENCHEN
360 370 380 390 400
AMVLKEGLEK TGRFNIVSKD EGVPLVAFSL KDRSRHDEFE ISDMLRRFGW
410 420 430 440 450
IVPAYTMPAD AQHVTVLRVV IREEFSRTLA ERLVLDIEKV MYQLDALPSR
460 470 480 490
IPPPPPPAQL VRKKSELETQ RSVTEAWKKF VLAKKTNGVC
Length:490
Mass (Da):55,681
Last modified:September 1, 2009 - v1
Checksum:iB206D5C1BA2E3592
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000760 Genomic DNA. Translation: EER95206.1.
RefSeqiXP_002468208.1. XM_002468163.1.
UniGeneiSbi.10791.

Genome annotation databases

EnsemblPlantsiSb01g041700.1; Sb01g041700.1; Sb01g041700.
GeneIDi8085236.
KEGGisbi:SORBI_01g041700.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000760 Genomic DNA. Translation: EER95206.1.
RefSeqiXP_002468208.1. XM_002468163.1.
UniGeneiSbi.10791.

3D structure databases

ProteinModelPortaliC5WRM9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4558.Sb01g041700.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSb01g041700.1; Sb01g041700.1; Sb01g041700.
GeneIDi8085236.
KEGGisbi:SORBI_01g041700.

Organism-specific databases

GrameneiC5WRM9.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
InParanoidiC5WRM9.
KOiK01580.
OMAiLHEMPER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5WRM9_SORBI
AccessioniPrimary (citable) accession number: C5WRM9
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: January 7, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.