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C5WMY2

- C5WMY2_SORBI

UniProt

C5WMY2 - C5WMY2_SORBI

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Protein
Submitted name: Putative uncharacterized protein Sb01g009880
Gene
Sb01g009880, SORBIDRAFT_01g009880
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Pyridoxal phosphate By similarity.UniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
  2. response to cadmium ion Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized protein Sb01g009880Imported
Gene namesi
Name:Sb01g009880Imported
ORF Names:SORBIDRAFT_01g009880Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 1

Organism-specific databases

GrameneiC5WMY2.

Subcellular locationi

GO - Cellular componenti

  1. cytosol Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb01g009880.1.

Structurei

3D structure databases

ProteinModelPortaliC5WMY2.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

C5WMY2-1 [UniParc]FASTAAdd to Basket

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MVLSHGVGGS DESVHSTFAS RYVRASLPRF RMPEQSIPKE AAYQIINDEL    50
MLDGNPRLNL ASFVTTWMEP ECDKLIQASV NKNYVDMDEY PVTTELQNRC 100
VNMIAHLFNA PLGDSETAVG VGTVGSSEAI MLAGLAFKRR WQNKMKAAGK 150
PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSDGYYVM DPQKAVDMVD 200
ENTICVAAIL GSTLNGEFED VKLLNDLLTK KNAETGWDTP IHVDAASGGF 250
IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL 300
IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY KNIMENCQEN 350
AMVLKQGLEK TGKFNIVSKD NGVPLVAFSL KDSSRHNEFE ISDFLRRFGW 400
IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVLDIEKV LHELDALPAR 450
VPSGDLAALA AAEASEKAME KQREVISLWK RAVLAKKKTN GVC 493
Length:493
Mass (Da):55,161
Last modified:September 1, 2009 - v1
Checksum:i4BD19B291B2BFBF2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000760 Genomic DNA. Translation: EER93555.1.
RefSeqiXP_002466557.1. XM_002466512.1.
UniGeneiSbi.2822.

Genome annotation databases

EnsemblPlantsiSb01g009880.1; Sb01g009880.1; Sb01g009880.
GeneIDi8063364.
KEGGisbi:SORBI_01g009880.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000760 Genomic DNA. Translation: EER93555.1 .
RefSeqi XP_002466557.1. XM_002466512.1.
UniGenei Sbi.2822.

3D structure databases

ProteinModelPortali C5WMY2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb01g009880.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb01g009880.1 ; Sb01g009880.1 ; Sb01g009880 .
GeneIDi 8063364.
KEGGi sbi:SORBI_01g009880.

Organism-specific databases

Gramenei C5WMY2.

Phylogenomic databases

eggNOGi COG0076.
HOGENOMi HOG000070228.
KOi K01580.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
InterProi IPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiC5WMY2_SORBI
AccessioniPrimary (citable) accession number: C5WMY2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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