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C5WMY2

- C5WMY2_SORBI

UniProt

C5WMY2 - C5WMY2_SORBI

Protein

Glutamate decarboxylase

Gene

Sb01g009880

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. glutamate decarboxylase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. glutamate metabolic process Source: InterPro
    2. response to cadmium ion Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    DecarboxylaseUniRule annotation, Lyase

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
    Gene namesi
    Name:Sb01g009880Imported
    ORF Names:SORBIDRAFT_01g009880Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 1

    Organism-specific databases

    GrameneiC5WMY2.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosol Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb01g009880.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5WMY2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0076.
    HOGENOMiHOG000070228.
    KOiK01580.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    InterProiIPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C5WMY2-1 [UniParc]FASTAAdd to Basket

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    MVLSHGVGGS DESVHSTFAS RYVRASLPRF RMPEQSIPKE AAYQIINDEL    50
    MLDGNPRLNL ASFVTTWMEP ECDKLIQASV NKNYVDMDEY PVTTELQNRC 100
    VNMIAHLFNA PLGDSETAVG VGTVGSSEAI MLAGLAFKRR WQNKMKAAGK 150
    PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSDGYYVM DPQKAVDMVD 200
    ENTICVAAIL GSTLNGEFED VKLLNDLLTK KNAETGWDTP IHVDAASGGF 250
    IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL 300
    IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY KNIMENCQEN 350
    AMVLKQGLEK TGKFNIVSKD NGVPLVAFSL KDSSRHNEFE ISDFLRRFGW 400
    IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVLDIEKV LHELDALPAR 450
    VPSGDLAALA AAEASEKAME KQREVISLWK RAVLAKKKTN GVC 493
    Length:493
    Mass (Da):55,161
    Last modified:September 1, 2009 - v1
    Checksum:i4BD19B291B2BFBF2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000760 Genomic DNA. Translation: EER93555.1.
    RefSeqiXP_002466557.1. XM_002466512.1.
    UniGeneiSbi.2822.

    Genome annotation databases

    EnsemblPlantsiSb01g009880.1; Sb01g009880.1; Sb01g009880.
    GeneIDi8063364.
    KEGGisbi:SORBI_01g009880.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000760 Genomic DNA. Translation: EER93555.1 .
    RefSeqi XP_002466557.1. XM_002466512.1.
    UniGenei Sbi.2822.

    3D structure databases

    ProteinModelPortali C5WMY2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb01g009880.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb01g009880.1 ; Sb01g009880.1 ; Sb01g009880 .
    GeneIDi 8063364.
    KEGGi sbi:SORBI_01g009880.

    Organism-specific databases

    Gramenei C5WMY2.

    Phylogenomic databases

    eggNOGi COG0076.
    HOGENOMi HOG000070228.
    KOi K01580.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    InterProi IPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5WMY2_SORBI
    AccessioniPrimary (citable) accession number: C5WMY2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3