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Protein

RNA polymerase II transcription factor B subunit 2

Gene

CTRG_00586

Organism
Candida tropicalis (strain ATCC MYA-3404 / T1) (Yeast)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processDNA damage, DNA repairUniRule annotation, Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase II transcription factor B subunit 2UniRule annotation
Gene namesi
ORF Names:CTRG_00586Imported
OrganismiCandida tropicalis (strain ATCC MYA-3404 / T1) (Yeast)Imported
Taxonomic identifieri294747 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesDebaryomycetaceaeCandida/Lodderomyces cladeCandida
Proteomesi
  • UP000002037 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi294747.XP_002545805.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the TFB2 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3471. Eukaryota.
COG5144. LUCA.
KOiK03144.
OrthoDBiEOG092C3703.

Family and domain databases

InterProiView protein in InterPro
IPR004598. TFIIH_p52/Tfb2.
PANTHERiPTHR13152. PTHR13152. 1 hit.
PfamiView protein in Pfam
PF03849. Tfb2. 1 hit.
TIGRFAMsiTIGR00625. tfb2. 1 hit.

Sequencei

Sequence statusi: Complete.

C5M3E7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAHLFKATV NEYLEGLPKT VQSKLYEAPA TCLSIFRLLS PMAKFYIMSM
60 70 80 90 100
IFNEKPIALR DLDKWCKPSA RKLEFEALKR LESLHLIEYD SKGSHIRLHS
110 120 130 140 150
TFRKNFRDCL TGSQNPNAFG SISTTADKYK VDIAFLDNFA SSKWETILHF
160 170 180 190 200
MVGTEATATP SDSVLSLLKL GGLMEGPNNK LRITNSGFQF LLQDVNAQIW
210 220 230 240 250
TLLLQYLNLT QELNMDPVDV LNFIFVLGSL ELGKSYAVST LSETQVSMLA
260 270 280 290 300
DLKDYGLVYQ RSDTSGRFYP TRLATTLTSD SAALKTPAMA MDEEEQQVVT
310 320 330 340 350
KESIIIETNF KLYAYTKSPL EIAILNLFVQ LKTRFANMVC GQITRESIRN
360 370 380 390 400
ALYNGITADQ IIKFLETHAH SQMRILAKEK LDKKIEFDTS HNINTAGGAP
410 420 430 440 450
QSKTDGSISQ HKLEILPPNV VDQIKLWQLE LDRIQTFDGY LFKDFANQQE
460 470 480 490
YDILSNYASE LGVLIWADKV KRKFFVTKDG MTQVADFANR KLKR
Length:494
Mass (Da):56,013
Last modified:July 28, 2009 - v1
Checksum:i734DDBBA58585650
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG692395 Genomic DNA. Translation: EER35847.1.
RefSeqiXP_002545805.1. XM_002545759.1.

Genome annotation databases

EnsemblFungiiEER35847; EER35847; CTRG_00586.
GeneIDi8296158.
KEGGictp:CTRG_00586.

Similar proteinsi

Entry informationi

Entry nameiC5M3E7_CANTT
AccessioniPrimary (citable) accession number: C5M3E7
Entry historyiIntegrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: June 7, 2017
This is version 36 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported