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Protein
Submitted name:

Tropomyosin, putative

Gene

Pmar_PMAR019698

Organism
Perkinsus marinus (strain ATCC 50983 / TXsc)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Tropomyosin, putativeImported
Gene namesi
ORF Names:Pmar_PMAR019698Imported
OrganismiPerkinsus marinus (strain ATCC 50983 / TXsc)Imported
Taxonomic identifieri423536 [NCBI]
Taxonomic lineageiEukaryotaAlveolataPerkinseaPerkinsidaPerkinsidaePerkinsus
ProteomesiUP000007800 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi423536.XP_002766339.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 8863T-SNARE coiled-coil homologyInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili15 – 3521Sequence analysisAdd
BLAST
Coiled coili99 – 12628Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410INKB. Eukaryota.
ENOG410XW3C. LUCA.
InParanoidiC5LVY6.

Family and domain databases

InterProiIPR020579. Exonuc_VII_lsu_C.
IPR019454. Lipoprot_YkyA-like.
IPR004089. MCPsignal_dom.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF02601. Exonuc_VII_L. 1 hit.
PF00015. MCPsignal. 1 hit.
PF10368. YkyA. 1 hit.
[Graphical view]
PROSITEiPS50192. T_SNARE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

C5LVY6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
EDVGIDYLIA XXKSLDQIKK NLDQISESLD QISKSLDQIS KSLDQISESL
60 70 80 90 100
DQISKSLDQI SESLDQISKS LDQISKSLDQ ISKSLDQISK SLDQICKSLD
110 120 130 140 150
QISKSLDQIS KNLDQVSKNL DQISKSLDQF SKSLDQFSES LDQLNDGKIN

V
Length:151
Mass (Da):16,845
Last modified:July 28, 2009 - v1
Checksum:i466418B57A991048
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei151 – 1511Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG686046 Genomic DNA. Translation: EEQ99056.1.
RefSeqiXP_002766339.1. XM_002766293.1.

Genome annotation databases

EnsemblProtistsiEEQ99056; EEQ99056; Pmar_PMAR019698.
GeneIDi9044380.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG686046 Genomic DNA. Translation: EEQ99056.1.
RefSeqiXP_002766339.1. XM_002766293.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi423536.XP_002766339.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEEQ99056; EEQ99056; Pmar_PMAR019698.
GeneIDi9044380.

Phylogenomic databases

eggNOGiENOG410INKB. Eukaryota.
ENOG410XW3C. LUCA.
InParanoidiC5LVY6.

Family and domain databases

InterProiIPR020579. Exonuc_VII_lsu_C.
IPR019454. Lipoprot_YkyA-like.
IPR004089. MCPsignal_dom.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF02601. Exonuc_VII_L. 1 hit.
PF00015. MCPsignal. 1 hit.
PF10368. YkyA. 1 hit.
[Graphical view]
PROSITEiPS50192. T_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. El-Sayed N., Caler E., Inman J., Amedeo P., Hass B., Wortman J.
    Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 50983 / TXscImported.

Entry informationi

Entry nameiC5LVY6_PERM5
AccessioniPrimary (citable) accession number: C5LVY6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: December 9, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.