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C5DYA8

- C5DYA8_ZYGRC

UniProt

C5DYA8 - C5DYA8_ZYGRC

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Protein

DNA ligase

Gene

ZYRO0F11572g

Organism
Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:ZYRO0F11572gImported
OrganismiZygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)Imported
Taxonomic identifieri559307 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeZygosaccharomyces
ProteomesiUP000008536: Chromosome F

Interactioni

Protein-protein interaction databases

STRINGi559307.ZYRO0F11572g.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036006.
InParanoidiC5DYA8.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5DYA8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLARVHQLSV IGVRRFGMAT SSSQPKKQAK QATLAKFFSS VKDRNSPTKK
60 70 80 90 100
NATPAFPTTT NVKRESPVRS NSNEKESSPM FDDSNGRSSA CSSAGLEMES
110 120 130 140 150
APAPKKLKME SDSNSTSKNN QDDHFSTVPY ADVCNIFQEI ESTSSRLSII
160 170 180 190 200
KICSDFFTQI VKEDSRNLVP TTYLFINKLG PDYEPGMELG LGEGLLMKTI
210 220 230 240 250
SESCGKSLAQ VKNRYREMGD LGQIAMEARN VQPTMFKPKP LTVGEVFVNL
260 270 280 290 300
RNIANAQGKD SQNKKIKLIK RMLTACQGVE AKFLIRSLES KLRIGLAEKT
310 320 330 340 350
VLISLSNALL RHEQGLDVEP SDEAVDKAEQ SIRDAFCQVP NYEIVINTCL
360 370 380 390 400
EHGISQLHKH CQLTPGIPLK PMLAKPTKAI TEVLDRFQGQ LFVSEYKYDG
410 420 430 440 450
ERAQLHLLPD GTMRIYSRNG ENMTERYPEI DIRDFLSDPS TESLILDCEA
460 470 480 490 500
VAWDKEQGKI LPFQVLSTRK RKDVDAKDVK VRVCLFAFDL LCHNGEPLIN
510 520 530 540 550
KSLRERQDDL QKVTKPVDGE FRYANKLITA NIEELQHFLD QSVKDSCEGL
560 570 580 590 600
MVKMLDGPES HYEPSKRSRN WLKLKKDYLN GVGDSLDLCV LGAYYGRGKR
610 620 630 640 650
TGTYGGFLLG CYNQDTGEYE TCCKIGTGFS EELLQQLYDR LKPTAMEAPA
660 670 680 690 700
AFYVYDSAQQ PDVWFEPTLL FEVLAADLSL SPVYKAGSAQ YDKGISLRFP
710 720 730
RFLRIRDDKS VEEATSSEQV VDLYEAQAHL S
Length:731
Mass (Da):82,004
Last modified:July 28, 2009 - v1
Checksum:iF47841A095211325
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU928178 Genomic DNA. Translation: CAR28769.1.
RefSeqiXP_002497702.1. XM_002497657.1.

Genome annotation databases

GeneIDi8205468.
KEGGizro:ZYRO0F11572g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU928178 Genomic DNA. Translation: CAR28769.1 .
RefSeqi XP_002497702.1. XM_002497657.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 559307.ZYRO0F11572g.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 8205468.
KEGGi zro:ZYRO0F11572g.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036006.
InParanoidi C5DYA8.
KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genomics of protoploid Saccharomycetaceae."
    The Genolevures Consortium
    Souciet J.-L., Dujon B., Gaillardin C., Johnston M., Baret P.V., Cliften P., Sherman D.J., Weissenbach J., Westhof E., Wincker P., Jubin C., Poulain J., Barbe V., Segurens B., Artiguenave F., Anthouard V., Vacherie B., Val M.-E.
    , Fulton R.S., Minx P., Wilson R., Durrens P., Jean G., Marck C., Martin T., Nikolski M., Rolland T., Seret M.-L., Casaregola S., Despons L., Fairhead C., Fischer G., Lafontaine I., Leh V., Lemaire M., de Montigny J., Neuveglise C., Thierry A., Blanc-Lenfle I., Bleykasten C., Diffels J., Fritsch E., Frangeul L., Goeffon A., Jauniaux N., Kachouri-Lafond R., Payen C., Potier S., Pribylova L., Ozanne C., Richard G.-F., Sacerdot C., Straub M.-L., Talla E.
    Genome Res. 19:1696-1709(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229Imported.

Entry informationi

Entry nameiC5DYA8_ZYGRC
AccessioniPrimary (citable) accession number: C5DYA8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3