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C5DYA8

- C5DYA8_ZYGRC

UniProt

C5DYA8 - C5DYA8_ZYGRC

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Protein
DNA ligase
Gene
ZYRO0F11572g
Organism
Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:ZYRO0F11572gImported
OrganismiZygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (Candida mogii)
Taxonomic identifieri559307 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeZygosaccharomyces
ProteomesiUP000008536: Chromosome F

Interactioni

Protein-protein interaction databases

STRINGi559307.ZYRO0F11572g.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036006.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5DYA8-1 [UniParc]FASTAAdd to Basket

« Hide

MLARVHQLSV IGVRRFGMAT SSSQPKKQAK QATLAKFFSS VKDRNSPTKK    50
NATPAFPTTT NVKRESPVRS NSNEKESSPM FDDSNGRSSA CSSAGLEMES 100
APAPKKLKME SDSNSTSKNN QDDHFSTVPY ADVCNIFQEI ESTSSRLSII 150
KICSDFFTQI VKEDSRNLVP TTYLFINKLG PDYEPGMELG LGEGLLMKTI 200
SESCGKSLAQ VKNRYREMGD LGQIAMEARN VQPTMFKPKP LTVGEVFVNL 250
RNIANAQGKD SQNKKIKLIK RMLTACQGVE AKFLIRSLES KLRIGLAEKT 300
VLISLSNALL RHEQGLDVEP SDEAVDKAEQ SIRDAFCQVP NYEIVINTCL 350
EHGISQLHKH CQLTPGIPLK PMLAKPTKAI TEVLDRFQGQ LFVSEYKYDG 400
ERAQLHLLPD GTMRIYSRNG ENMTERYPEI DIRDFLSDPS TESLILDCEA 450
VAWDKEQGKI LPFQVLSTRK RKDVDAKDVK VRVCLFAFDL LCHNGEPLIN 500
KSLRERQDDL QKVTKPVDGE FRYANKLITA NIEELQHFLD QSVKDSCEGL 550
MVKMLDGPES HYEPSKRSRN WLKLKKDYLN GVGDSLDLCV LGAYYGRGKR 600
TGTYGGFLLG CYNQDTGEYE TCCKIGTGFS EELLQQLYDR LKPTAMEAPA 650
AFYVYDSAQQ PDVWFEPTLL FEVLAADLSL SPVYKAGSAQ YDKGISLRFP 700
RFLRIRDDKS VEEATSSEQV VDLYEAQAHL S 731
Length:731
Mass (Da):82,004
Last modified:July 28, 2009 - v1
Checksum:iF47841A095211325
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU928178 Genomic DNA. Translation: CAR28769.1.
RefSeqiXP_002497702.1. XM_002497657.1.

Genome annotation databases

GeneIDi8205468.
KEGGizro:ZYRO0F11572g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU928178 Genomic DNA. Translation: CAR28769.1 .
RefSeqi XP_002497702.1. XM_002497657.1.

3D structure databases

ModBasei Search...

Protein-protein interaction databases

STRINGi 559307.ZYRO0F11572g.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 8205468.
KEGGi zro:ZYRO0F11572g.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036006.
KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genomics of protoploid Saccharomycetaceae."
    The Genolevures Consortium
    Souciet J.-L., Dujon B., Gaillardin C., Johnston M., Baret P.V., Cliften P., Sherman D.J., Weissenbach J., Westhof E., Wincker P., Jubin C., Poulain J., Barbe V., Segurens B., Artiguenave F., Anthouard V., Vacherie B., Val M.-E.
    , Fulton R.S., Minx P., Wilson R., Durrens P., Jean G., Marck C., Martin T., Nikolski M., Rolland T., Seret M.-L., Casaregola S., Despons L., Fairhead C., Fischer G., Lafontaine I., Leh V., Lemaire M., de Montigny J., Neuveglise C., Thierry A., Blanc-Lenfle I., Bleykasten C., Diffels J., Fritsch E., Frangeul L., Goeffon A., Jauniaux N., Kachouri-Lafond R., Payen C., Potier S., Pribylova L., Ozanne C., Richard G.-F., Sacerdot C., Straub M.-L., Talla E.
    Genome Res. 19:1696-1709(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229.

Entry informationi

Entry nameiC5DYA8_ZYGRC
AccessioniPrimary (citable) accession number: C5DYA8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: November 13, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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