Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

C5DEQ7 (C5DEQ7_LACTC) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length951 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
C5DEQ7 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: 6F40D1836C666F1E

FASTA951108,867
        10         20         30         40         50         60 
MDGNGKCPSE TDTSKISENE PHNFAPSPDF RWLCEELFHR LDAINEHRQE LGKAVTVKRV 

        70         80         90        100        110        120 
EIITCFIKLW RTTVGDDFFP ALRLMFPYRD PRAYHIKDFT LIKAVCKALN LSRDSLTERR 

       130        140        150        160        170        180 
LLNWKQYAGR GTSLSKFCVQ EISKRRKEPL PERQLTIDGL NEKLDELAKE ASGKKAWGTT 

       190        200        210        220        230        240 
GLSESHSFQF CLKNLSFLEL RYFFDIVLKN RVIGGLEHKF LACWHPDAQI YLGVVTDLKI 

       250        260        270        280        290        300 
LSKKLWNPSV RLDKRDLSIN IGHAFAPHLA KRLHVSYERI CSKLKHDFIL EEKMDGERIQ 

       310        320        330        340        350        360 
LHYVNGGSVL KFLSRRGIDF SHLYGQEVAR GVISQYLKLK SDVRDCVLDG EMVSYDKKRK 

       370        380        390        400        410        420 
IILPFGIVKS AAVDELINSE VGNENDGYRP LYMVFDLVYL NGVSLTKVPL HIRKEYLKEI 

       430        440        450        460        470        480 
LSPVPDVVEI LKGIRACDAK AIKNFMQRAI EMGSEGVIVK QASSTYEVGA RNDHWVKIKP 

       490        500        510        520        530        540 
EYFEDLGETM DLVVIGRDPG KKDSLMCGLL VSDSEHILEN FGPIEHGKEG DPIIKCVSFC 

       550        560        570        580        590        600 
NVANGVSDEE FKEINRKTRG SWVSYKEKPP PLSLLEFGSK IPVEWIDPKN SVVIEVKARS 

       610        620        630        640        650        660 
VENSEYSSKR YRAGSTLHSA YCRRIRNDKD WTTCTSVAQY QQAKAAHNYH RYKRKVHQVS 

       670        680        690        700        710        720 
PRRKRNVHEI FEYCAGEAKS ELDTEGSSIF EGLHFYILSD YVTSQRRRYE RGMVAAKVVK 

       730        740        750        760        770        780 
HGGLIVKNID MRPEHLSYLR IVSGKTTIEC RNLVNRGYDI IDPCWIFDCI SAGFQLGIEP 

       790        800        810        820        830        840 
KHCFQTSRRL LDNSRQRVDQ YGDSFSRPLD TTEFQQLFKF FCSSPSDFSS RISSMLQDDL 

       850        860        870        880        890        900 
DEAPLFLLQR FKIYVLAADL IPQQFSILRR KIELYGGVVS ETLEGANLVL VPSALSTART 

       910        920        930        940        950 
AYYVQELRQK IAGNAFAGNT NTRIPHIVRS EWLDTCTTEQ CLVPEEDFSS I 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU928167 Genomic DNA. Translation: CAR22268.1.
RefSeqXP_002552706.1. XM_002552660.1.

3D structure databases

ProteinModelPortalC5DEQ7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING559295.KLTH0C11286g.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8291592.
KEGGlth:KLTH0C11286g.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000093622.
KOK10777.
OrthoDBEOG7QC84G.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5DEQ7_LACTC
AccessionPrimary (citable) accession number: C5DEQ7
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: November 13, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)