Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

C5D1R4 (C5D1R4_VARPS) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Vapar_6271 EMBL ACS22834.1
OrganismVariovorax paradoxus (strain S110) [Complete proteome] [HAMAP] EMBL ACS22834.1
Taxonomic identifier543728 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length476 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the aldehyde dehydrogenase family. RuleBase RU003345

Sequences

Sequence LengthMass (Da)Tools
C5D1R4 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: F91639A1EEC51EFB

FASTA47650,080
        10         20         30         40         50         60 
MWNIDQAYID GAFVPVQGSE RLEICNPATE RAIGTVTLAN REDAKRAIAA ANRAQPALAR 

        70         80         90        100        110        120 
STRAQRIDML RRLEAAVLAR TERIREATIE EYGGPLARSQ WVSNYASQCF ATTAQALRDY 

       130        140        150        160        170        180 
AFERRLGEAT VVMEPVGVAG LIAPWNAAAG SICSKLASAI AAGCASVVKP SELGPLQAQA 

       190        200        210        220        230        240 
VTEALHDAGL PPGVFNVLLG RGSDVGDEIA TSAGIAKISF TGSTQTGKLI ARAGVDTMKR 

       250        260        270        280        290        300 
VSLALSGKSA TLVLDDADLA AALPLALNAA FMNNGQACVA GTRLLIPRAH MKAAIEQVRA 

       310        320        330        340        350        360 
AAAALRVGDP RDPATAIGPL ASQAQFDRVQ HFIRRGLAQG ATLVAGGEGR PDGFERGWFV 

       370        380        390        400        410        420 
RPTVFAEVRN DMDIAREEIF GPVLSMIGYG DEDEAIEIAN DSPYGLQAYV FSSDAQRALR 

       430        440        450        460        470 
VASRLRVGTV LVNRIAPELA APFGGVKQSG VGREFGVFGM EAFLEPKTIA AADGIA 

« Hide

References

[1]"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001636 Genomic DNA. Translation: ACS22834.1.
RefSeqYP_002948100.1. NC_012792.1.

3D structure databases

ProteinModelPortalC5D1R4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING543728.Vapar_6271.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS22834; ACS22834; Vapar_6271.
GeneID7975487.
KEGGvap:Vapar_6271.
PATRIC24012972. VBIVarPar36677_6233.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1012.
HOGENOMHOG000271505.
KOK00128.
OMAFIARIAH.
OrthoDBEOG6BS8QW.
ProtClustDBCLSK2772071.

Enzyme and pathway databases

BioCycVPAR543728:GHLL-6343-MONOMER.

Family and domain databases

Gene3D3.40.309.10. 1 hit.
3.40.605.10. 1 hit.
InterProIPR016161. Ald_DH/histidinol_DH.
IPR016163. Ald_DH_C.
IPR016160. Ald_DH_CS.
IPR016162. Ald_DH_N.
IPR015590. Aldehyde_DH_dom.
[Graphical view]
PfamPF00171. Aldedh. 1 hit.
[Graphical view]
SUPFAMSSF53720. SSF53720. 1 hit.
PROSITEPS00070. ALDEHYDE_DEHYDR_CYS. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5D1R4_VARPS
AccessionPrimary (citable) accession number: C5D1R4
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: November 13, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)