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C5CVE3 (C5CVE3_VARPS) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=4.1.1.39 EMBL ACS18592.1
Gene names
Ordered Locus Names:Vapar_1945 EMBL ACS18592.1
OrganismVariovorax paradoxus (strain S110) [Complete proteome] [HAMAP] EMBL ACS18592.1
Taxonomic identifier543728 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length423 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ACS18592.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C5CVE3 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: EC8DED0C62B33C81

FASTA42344,844
        10         20         30         40         50         60 
MTVAERIRAR YLIETPLDPA AVAEVMAGEQ SCGTFTRVEG ETDALRERAR ATVEAITELA 

        70         80         90        100        110        120 
PAEAPSLPNA MLERKGTRGP WRRAHIDISF PVANIGANLP TLAATVSGNL YDLGEVTGLR 

       130        140        150        160        170        180 
LESLQLPAAY RAQFEMPRAG IAGTRRITGV ASGALVGTII KPNVGLSAGE TAELVARLCA 

       190        200        210        220        230        240 
AGVDFIKDDE VCANPAHAPL AERVPAVMAV VRAHQQRTGK HVMVAFNITD ETDAMKRHAD 

       250        260        270        280        290        300 
LVEREGGSCV MASLNWCGHS GMQTLRRHTG LALHGHRNGY GALSRHPLLG ISFQAYQTLW 

       310        320        330        340        350        360 
RLAGVDHMHV HGLQGKFSQP DSEVIESARD CFTPLTDAAD DRVMPAFSSG QWAGTVPATW 

       370        380        390        400        410        420 
AAICSDDLLF MAGGGILAHP DGAAAGVTSI RQAWSAARAG TALQEAARGA PELARALAFF 


GKP 

« Hide

References

[1]"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001635 Genomic DNA. Translation: ACS18592.1.
RefSeqYP_002943858.1. NC_012791.1.

3D structure databases

ProteinModelPortalC5CVE3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING543728.Vapar_1945.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS18592; ACS18592; Vapar_1945.
GeneID7971124.
KEGGvap:Vapar_1945.
PATRIC24004336. VBIVarPar36677_1970.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1850.
HOGENOMHOG000230831.
KOK01601.
OMAFECAGDP.
OrthoDBEOG62K1SK.
ProtClustDBCLSK952754.

Enzyme and pathway databases

BioCycVPAR543728:GHLL-1960-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5CVE3_VARPS
AccessionPrimary (citable) accession number: C5CVE3
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: January 22, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)