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C5CV58

- DCD_VARPS

UniProt

C5CV58 - DCD_VARPS

Protein

Deoxycytidine triphosphate deaminase

Gene

dcd

Organism
Variovorax paradoxus (strain S110)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    dCTP + H2O = dUTP + NH3.UniRule annotation

    Pathwayi

    GO - Molecular functioni

    1. dCTP deaminase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. dUMP biosynthetic process Source: UniProtKB-UniPathway
    2. dUTP biosynthetic process Source: InterPro
    3. pyrimidine ribonucleotide biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    Nucleotide metabolism

    Enzyme and pathway databases

    BioCyciVPAR543728:GHLL-3917-MONOMER.
    UniPathwayiUPA00610; UER00665.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Deoxycytidine triphosphate deaminaseUniRule annotation (EC:3.5.4.13UniRule annotation)
    Short name:
    dCTP deaminaseUniRule annotation
    Gene namesi
    Name:dcdUniRule annotation
    Ordered Locus Names:Vapar_3880
    OrganismiVariovorax paradoxus (strain S110)
    Taxonomic identifieri543728 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000000453: Chromosome 1

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 188188Deoxycytidine triphosphate deaminasePRO_1000203371Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi543728.Vapar_3880.

    Structurei

    3D structure databases

    ProteinModelPortaliC5CV58.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the dCTP deaminase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0717.
    HOGENOMiHOG000228600.
    KOiK01494.
    OMAiEFEGHIT.
    OrthoDBiEOG67DPKR.

    Family and domain databases

    Gene3Di2.70.40.10. 1 hit.
    HAMAPiMF_00146. dCTP_deaminase.
    InterProiIPR011962. dCTP_deam.
    IPR029054. dUTPase-like.
    IPR008180. dUTPase/dCTP_deaminase.
    [Graphical view]
    PfamiPF00692. dUTPase. 1 hit.
    [Graphical view]
    SUPFAMiSSF51283. SSF51283. 1 hit.
    TIGRFAMsiTIGR02274. dCTP_deam. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C5CV58-1 [UniParc]FASTAAdd to Basket

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    MSIKSDKWIR RMAEQNGMIE PFEPGQVREA AGHKIISYGT SSYGYDIRCA    50
    PEFKVFTNIH STVVDPKNFD EKSFVDMHGD YCIIPPNSFA LARTVEYFRI 100
    PRNVLTICLG KSTYARCGII VNVTPFEPEW EGYVTLEFSN TTPLPAKIYA 150
    GEGCAQVLFF ESDEVCETSY KDRGGKYQGQ RGVTLPKT 188
    Length:188
    Mass (Da):21,221
    Last modified:July 28, 2009 - v1
    Checksum:i18B9FA0B52B20CC8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS20494.1.
    RefSeqiYP_002945760.1. NC_012791.1.

    Genome annotation databases

    EnsemblBacteriaiACS20494; ACS20494; Vapar_3880.
    GeneIDi7969737.
    KEGGivap:Vapar_3880.
    PATRICi24008231. VBIVarPar36677_3897.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS20494.1 .
    RefSeqi YP_002945760.1. NC_012791.1.

    3D structure databases

    ProteinModelPortali C5CV58.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 543728.Vapar_3880.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACS20494 ; ACS20494 ; Vapar_3880 .
    GeneIDi 7969737.
    KEGGi vap:Vapar_3880.
    PATRICi 24008231. VBIVarPar36677_3897.

    Phylogenomic databases

    eggNOGi COG0717.
    HOGENOMi HOG000228600.
    KOi K01494.
    OMAi EFEGHIT.
    OrthoDBi EOG67DPKR.

    Enzyme and pathway databases

    UniPathwayi UPA00610 ; UER00665 .
    BioCyci VPAR543728:GHLL-3917-MONOMER.

    Family and domain databases

    Gene3Di 2.70.40.10. 1 hit.
    HAMAPi MF_00146. dCTP_deaminase.
    InterProi IPR011962. dCTP_deam.
    IPR029054. dUTPase-like.
    IPR008180. dUTPase/dCTP_deaminase.
    [Graphical view ]
    Pfami PF00692. dUTPase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51283. SSF51283. 1 hit.
    TIGRFAMsi TIGR02274. dCTP_deam. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
      Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
      J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S110.

    Entry informationi

    Entry nameiDCD_VARPS
    AccessioniPrimary (citable) accession number: C5CV58
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 22, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3