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C5CUB4

- C5CUB4_VARPS

UniProt

C5CUB4 - C5CUB4_VARPS

Protein

Superoxide dismutase [Cu-Zn]

Gene

Vapar_3711

Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

    Cofactori

    Binds 1 copper ion per subunit.UniRule annotation
    Binds 1 zinc ion per subunit.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Ligandi

    CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

    Enzyme and pathway databases

    BioCyciVPAR543728:GHLL-3743-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:Vapar_3711Imported
    OrganismiVariovorax paradoxus (strain S110)Imported
    Taxonomic identifieri543728 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000000453: Chromosome 1

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3434 PotentialImportedAdd
    BLAST
    Chaini35 – 180146 PotentialImportedPRO_5000469374Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi543728.Vapar_3711.

    Structurei

    3D structure databases

    ProteinModelPortaliC5CUB4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG2032.
    HOGENOMiHOG000263448.
    KOiK04565.
    OMAiEIEVKLH.
    OrthoDBiEOG6K13RS.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    PRINTSiPR00068. CUZNDISMTASE.
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    C5CUB4-1 [UniParc]FASTAAdd to Basket

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    MNHRLLAATG TALLASALLS ACGSMMGGKP SAAAELMPTA AISPNPTRGT    50
    VIFTALDHGV RVAGEVRGLA PGSEHGFHIH EKGDCGDNGN ASGGHFNPAG 100
    GTHGKFSAPG SHAGELPSLV ADGSGVARFS VDVHSISLAE GTANNVVGRA 150
    LVVHRDRDDF TTQPAGNSGP RTACAVIARR 180
    Length:180
    Mass (Da):18,063
    Last modified:July 28, 2009 - v1
    Checksum:iD54FB5B5B9CE62F8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS20327.1.
    RefSeqiYP_002945593.1. NC_012791.1.

    Genome annotation databases

    EnsemblBacteriaiACS20327; ACS20327; Vapar_3711.
    GeneIDi7973944.
    KEGGivap:Vapar_3711.
    PATRICi24007885. VBIVarPar36677_3728.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS20327.1 .
    RefSeqi YP_002945593.1. NC_012791.1.

    3D structure databases

    ProteinModelPortali C5CUB4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 543728.Vapar_3711.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACS20327 ; ACS20327 ; Vapar_3711 .
    GeneIDi 7973944.
    KEGGi vap:Vapar_3711.
    PATRICi 24007885. VBIVarPar36677_3728.

    Phylogenomic databases

    eggNOGi COG2032.
    HOGENOMi HOG000263448.
    KOi K04565.
    OMAi EIEVKLH.
    OrthoDBi EOG6K13RS.

    Enzyme and pathway databases

    BioCyci VPAR543728:GHLL-3743-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    PRINTSi PR00068. CUZNDISMTASE.
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
      Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
      J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S110Imported.

    Entry informationi

    Entry nameiC5CUB4_VARPS
    AccessioniPrimary (citable) accession number: C5CUB4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3