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C5CTW0

- C5CTW0_VARPS

UniProt

C5CTW0 - C5CTW0_VARPS

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Protein
Submitted name: DNA ligase D
Gene
Vapar_1660
Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-1672-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Vapar_1660Imported
OrganismiVariovorax paradoxus (strain S110)Imported
Taxonomic identifieri543728 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000000453: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi543728.Vapar_1660.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5CTW0-1 [UniParc]FASTAAdd to Basket

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MARANPLKRY KEKRNFGATP EPAEGGASAP GVLQFVVQKH WATRLHYDFR    50
IELDGAMKSW AVPKGPSYDT HDKRMAVHVE DHPIAYNQFE GEIPPRQYGA 100
GKVIIWDKGS WTPIGDPRKG YRAGRLKFEL HGYKLRGKWT LVRMHGKADD 150
KQDAWLLIKE HDEYARPAAE FSVVDQFPDS VAQMPMPAAA VSAPAEAPAA 200
PARKRGGKAS ASGMPADAVK AAMPAKLSPL LATLVDGPPH DPQNWLYEIK 250
FDGYRLLARI DAKGGVQLVT RNGHDWSSRM PHLVRAIERM KLAPGWLDGE 300
IVVLNESGGT DFQALQNAFD SENTRNIVYF LFDLPYYGGF DLTGVPLVER 350
RGLLQALLAK APPEIRFSEI FDAPPEDIVA SACKIGLEGV IGKRKNSTYA 400
SRRSPDWIKL KCSQRQEFVI GGYTDPKGSR VGIGALLIGV HDDKGDLIYA 450
GAVGAGFNGR TLADMLERLK PLGIDKRPFK NPTENDRRAH WVKPVLLAEV 500
TFSEWTKDGH VRHPVFHSVR SDKPAKAIVR EKPVHPAGAG REAEAEPEPA 550
ATMPANFKVS HADRVVDPST GITKVEVVRF YGLVAPLMMP HLKGRPVSFV 600
RAPQGIGGQL FFQKHLELGQ MAGVRQLDAA LWPKHPELIE IAGPLGLLSA 650
AQMNVVEFHT WNGLKTLIGK PDRMTFDLDP GEGVGWPMVL QAAELMRVVL 700
DELGLAPFCK TSGGKGLHVV VPLKRQYDWD TIKDFSQAIV RHMARTLPQM 750
FVAKSGPDNR VGRIFIDYLR NGFGATTICA WSVRARPGMG VSVPVEWQEV 800
PTLTSGAQWT LRNIHARLDR GNDPWAAYAK AAKSPGAAMK LLGFRVR 847
Length:847
Mass (Da):93,428
Last modified:July 28, 2009 - v1
Checksum:iD177C97E9F80166F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001635 Genomic DNA. Translation: ACS18310.1.
RefSeqiYP_002943576.1. NC_012791.1.

Genome annotation databases

EnsemblBacteriaiACS18310; ACS18310; Vapar_1660.
GeneIDi7974728.
KEGGivap:Vapar_1660.
PATRICi24003756. VBIVarPar36677_1683.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001635 Genomic DNA. Translation: ACS18310.1 .
RefSeqi YP_002943576.1. NC_012791.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 543728.Vapar_1660.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS18310 ; ACS18310 ; Vapar_1660 .
GeneIDi 7974728.
KEGGi vap:Vapar_1660.
PATRICi 24003756. VBIVarPar36677_1683.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci VPAR543728:GHLL-1672-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S110.

Entry informationi

Entry nameiC5CTW0_VARPS
AccessioniPrimary (citable) accession number: C5CTW0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: May 14, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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