Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

C5CTW0

- C5CTW0_VARPS

UniProt

C5CTW0 - C5CTW0_VARPS

Protein
Submitted name:

DNA ligase D

Gene

Vapar_1660

Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 30 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVPAR543728:GHLL-1672-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Vapar_1660Imported
    OrganismiVariovorax paradoxus (strain S110)Imported
    Taxonomic identifieri543728 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000000453: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi543728.Vapar_1660.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C5CTW0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARANPLKRY KEKRNFGATP EPAEGGASAP GVLQFVVQKH WATRLHYDFR    50
    IELDGAMKSW AVPKGPSYDT HDKRMAVHVE DHPIAYNQFE GEIPPRQYGA 100
    GKVIIWDKGS WTPIGDPRKG YRAGRLKFEL HGYKLRGKWT LVRMHGKADD 150
    KQDAWLLIKE HDEYARPAAE FSVVDQFPDS VAQMPMPAAA VSAPAEAPAA 200
    PARKRGGKAS ASGMPADAVK AAMPAKLSPL LATLVDGPPH DPQNWLYEIK 250
    FDGYRLLARI DAKGGVQLVT RNGHDWSSRM PHLVRAIERM KLAPGWLDGE 300
    IVVLNESGGT DFQALQNAFD SENTRNIVYF LFDLPYYGGF DLTGVPLVER 350
    RGLLQALLAK APPEIRFSEI FDAPPEDIVA SACKIGLEGV IGKRKNSTYA 400
    SRRSPDWIKL KCSQRQEFVI GGYTDPKGSR VGIGALLIGV HDDKGDLIYA 450
    GAVGAGFNGR TLADMLERLK PLGIDKRPFK NPTENDRRAH WVKPVLLAEV 500
    TFSEWTKDGH VRHPVFHSVR SDKPAKAIVR EKPVHPAGAG REAEAEPEPA 550
    ATMPANFKVS HADRVVDPST GITKVEVVRF YGLVAPLMMP HLKGRPVSFV 600
    RAPQGIGGQL FFQKHLELGQ MAGVRQLDAA LWPKHPELIE IAGPLGLLSA 650
    AQMNVVEFHT WNGLKTLIGK PDRMTFDLDP GEGVGWPMVL QAAELMRVVL 700
    DELGLAPFCK TSGGKGLHVV VPLKRQYDWD TIKDFSQAIV RHMARTLPQM 750
    FVAKSGPDNR VGRIFIDYLR NGFGATTICA WSVRARPGMG VSVPVEWQEV 800
    PTLTSGAQWT LRNIHARLDR GNDPWAAYAK AAKSPGAAMK LLGFRVR 847
    Length:847
    Mass (Da):93,428
    Last modified:July 28, 2009 - v1
    Checksum:iD177C97E9F80166F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS18310.1.
    RefSeqiYP_002943576.1. NC_012791.1.

    Genome annotation databases

    EnsemblBacteriaiACS18310; ACS18310; Vapar_1660.
    GeneIDi7974728.
    KEGGivap:Vapar_1660.
    PATRICi24003756. VBIVarPar36677_1683.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS18310.1 .
    RefSeqi YP_002943576.1. NC_012791.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 543728.Vapar_1660.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACS18310 ; ACS18310 ; Vapar_1660 .
    GeneIDi 7974728.
    KEGGi vap:Vapar_1660.
    PATRICi 24003756. VBIVarPar36677_1683.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci VPAR543728:GHLL-1672-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
      Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
      J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S110Imported.

    Entry informationi

    Entry nameiC5CTW0_VARPS
    AccessioniPrimary (citable) accession number: C5CTW0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3