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C5CTW0

- C5CTW0_VARPS

UniProt

C5CTW0 - C5CTW0_VARPS

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Protein
Submitted name:

DNA ligase D

Gene

Vapar_1660

Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-1672-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Vapar_1660Imported
OrganismiVariovorax paradoxus (strain S110)Imported
Taxonomic identifieri543728 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000000453: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi543728.Vapar_1660.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5CTW0-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MARANPLKRY KEKRNFGATP EPAEGGASAP GVLQFVVQKH WATRLHYDFR
60 70 80 90 100
IELDGAMKSW AVPKGPSYDT HDKRMAVHVE DHPIAYNQFE GEIPPRQYGA
110 120 130 140 150
GKVIIWDKGS WTPIGDPRKG YRAGRLKFEL HGYKLRGKWT LVRMHGKADD
160 170 180 190 200
KQDAWLLIKE HDEYARPAAE FSVVDQFPDS VAQMPMPAAA VSAPAEAPAA
210 220 230 240 250
PARKRGGKAS ASGMPADAVK AAMPAKLSPL LATLVDGPPH DPQNWLYEIK
260 270 280 290 300
FDGYRLLARI DAKGGVQLVT RNGHDWSSRM PHLVRAIERM KLAPGWLDGE
310 320 330 340 350
IVVLNESGGT DFQALQNAFD SENTRNIVYF LFDLPYYGGF DLTGVPLVER
360 370 380 390 400
RGLLQALLAK APPEIRFSEI FDAPPEDIVA SACKIGLEGV IGKRKNSTYA
410 420 430 440 450
SRRSPDWIKL KCSQRQEFVI GGYTDPKGSR VGIGALLIGV HDDKGDLIYA
460 470 480 490 500
GAVGAGFNGR TLADMLERLK PLGIDKRPFK NPTENDRRAH WVKPVLLAEV
510 520 530 540 550
TFSEWTKDGH VRHPVFHSVR SDKPAKAIVR EKPVHPAGAG REAEAEPEPA
560 570 580 590 600
ATMPANFKVS HADRVVDPST GITKVEVVRF YGLVAPLMMP HLKGRPVSFV
610 620 630 640 650
RAPQGIGGQL FFQKHLELGQ MAGVRQLDAA LWPKHPELIE IAGPLGLLSA
660 670 680 690 700
AQMNVVEFHT WNGLKTLIGK PDRMTFDLDP GEGVGWPMVL QAAELMRVVL
710 720 730 740 750
DELGLAPFCK TSGGKGLHVV VPLKRQYDWD TIKDFSQAIV RHMARTLPQM
760 770 780 790 800
FVAKSGPDNR VGRIFIDYLR NGFGATTICA WSVRARPGMG VSVPVEWQEV
810 820 830 840
PTLTSGAQWT LRNIHARLDR GNDPWAAYAK AAKSPGAAMK LLGFRVR
Length:847
Mass (Da):93,428
Last modified:July 28, 2009 - v1
Checksum:iD177C97E9F80166F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS18310.1.
RefSeqiWP_012746802.1. NC_012791.1.
YP_002943576.1. NC_012791.1.

Genome annotation databases

EnsemblBacteriaiACS18310; ACS18310; Vapar_1660.
GeneIDi7974728.
KEGGivap:Vapar_1660.
PATRICi24003756. VBIVarPar36677_1683.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS18310.1 .
RefSeqi WP_012746802.1. NC_012791.1.
YP_002943576.1. NC_012791.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 543728.Vapar_1660.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS18310 ; ACS18310 ; Vapar_1660 .
GeneIDi 7974728.
KEGGi vap:Vapar_1660.
PATRICi 24003756. VBIVarPar36677_1683.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci VPAR543728:GHLL-1672-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S110Imported.

Entry informationi

Entry nameiC5CTW0_VARPS
AccessioniPrimary (citable) accession number: C5CTW0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3