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C5CTW0 (C5CTW0_VARPS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Vapar_1660 EMBL ACS18310.1
OrganismVariovorax paradoxus (strain S110) [Complete proteome] [HAMAP] EMBL ACS18310.1
Taxonomic identifier543728 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length847 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C5CTW0 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: D177C97E9F80166F

FASTA84793,428
        10         20         30         40         50         60 
MARANPLKRY KEKRNFGATP EPAEGGASAP GVLQFVVQKH WATRLHYDFR IELDGAMKSW 

        70         80         90        100        110        120 
AVPKGPSYDT HDKRMAVHVE DHPIAYNQFE GEIPPRQYGA GKVIIWDKGS WTPIGDPRKG 

       130        140        150        160        170        180 
YRAGRLKFEL HGYKLRGKWT LVRMHGKADD KQDAWLLIKE HDEYARPAAE FSVVDQFPDS 

       190        200        210        220        230        240 
VAQMPMPAAA VSAPAEAPAA PARKRGGKAS ASGMPADAVK AAMPAKLSPL LATLVDGPPH 

       250        260        270        280        290        300 
DPQNWLYEIK FDGYRLLARI DAKGGVQLVT RNGHDWSSRM PHLVRAIERM KLAPGWLDGE 

       310        320        330        340        350        360 
IVVLNESGGT DFQALQNAFD SENTRNIVYF LFDLPYYGGF DLTGVPLVER RGLLQALLAK 

       370        380        390        400        410        420 
APPEIRFSEI FDAPPEDIVA SACKIGLEGV IGKRKNSTYA SRRSPDWIKL KCSQRQEFVI 

       430        440        450        460        470        480 
GGYTDPKGSR VGIGALLIGV HDDKGDLIYA GAVGAGFNGR TLADMLERLK PLGIDKRPFK 

       490        500        510        520        530        540 
NPTENDRRAH WVKPVLLAEV TFSEWTKDGH VRHPVFHSVR SDKPAKAIVR EKPVHPAGAG 

       550        560        570        580        590        600 
REAEAEPEPA ATMPANFKVS HADRVVDPST GITKVEVVRF YGLVAPLMMP HLKGRPVSFV 

       610        620        630        640        650        660 
RAPQGIGGQL FFQKHLELGQ MAGVRQLDAA LWPKHPELIE IAGPLGLLSA AQMNVVEFHT 

       670        680        690        700        710        720 
WNGLKTLIGK PDRMTFDLDP GEGVGWPMVL QAAELMRVVL DELGLAPFCK TSGGKGLHVV 

       730        740        750        760        770        780 
VPLKRQYDWD TIKDFSQAIV RHMARTLPQM FVAKSGPDNR VGRIFIDYLR NGFGATTICA 

       790        800        810        820        830        840 
WSVRARPGMG VSVPVEWQEV PTLTSGAQWT LRNIHARLDR GNDPWAAYAK AAKSPGAAMK 


LLGFRVR 

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References

[1]"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001635 Genomic DNA. Translation: ACS18310.1.
RefSeqYP_002943576.1. NC_012791.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING543728.Vapar_1660.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS18310; ACS18310; Vapar_1660.
GeneID7974728.
KEGGvap:Vapar_1660.
PATRIC24003756. VBIVarPar36677_1683.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAHPLDYAD.
OrthoDBEOG661H49.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycVPAR543728:GHLL-1672-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5CTW0_VARPS
AccessionPrimary (citable) accession number: C5CTW0
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: April 16, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)