C5CTW0 (C5CTW0_VARPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ACS18310.1

Gene names

Ordered Locus Names:

Vapar_1660

Organism

Variovorax paradoxus (strain S110) [Complete proteome] [HAMAP]

Taxonomic identifier

543728 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Variovorax › Variovorax paradoxus

Protein attributes

Sequence length	847 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACS18310.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5CTW0 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: D177C97E9F80166F	FASTA	847	93,428
	10 20 30 40 50 60 MARANPLKRY KEKRNFGATP EPAEGGASAP GVLQFVVQKH WATRLHYDFR IELDGAMKSW 70 80 90 100 110 120 AVPKGPSYDT HDKRMAVHVE DHPIAYNQFE GEIPPRQYGA GKVIIWDKGS WTPIGDPRKG 130 140 150 160 170 180 YRAGRLKFEL HGYKLRGKWT LVRMHGKADD KQDAWLLIKE HDEYARPAAE FSVVDQFPDS 190 200 210 220 230 240 VAQMPMPAAA VSAPAEAPAA PARKRGGKAS ASGMPADAVK AAMPAKLSPL LATLVDGPPH 250 260 270 280 290 300 DPQNWLYEIK FDGYRLLARI DAKGGVQLVT RNGHDWSSRM PHLVRAIERM KLAPGWLDGE 310 320 330 340 350 360 IVVLNESGGT DFQALQNAFD SENTRNIVYF LFDLPYYGGF DLTGVPLVER RGLLQALLAK 370 380 390 400 410 420 APPEIRFSEI FDAPPEDIVA SACKIGLEGV IGKRKNSTYA SRRSPDWIKL KCSQRQEFVI 430 440 450 460 470 480 GGYTDPKGSR VGIGALLIGV HDDKGDLIYA GAVGAGFNGR TLADMLERLK PLGIDKRPFK 490 500 510 520 530 540 NPTENDRRAH WVKPVLLAEV TFSEWTKDGH VRHPVFHSVR SDKPAKAIVR EKPVHPAGAG 550 560 570 580 590 600 REAEAEPEPA ATMPANFKVS HADRVVDPST GITKVEVVRF YGLVAPLMMP HLKGRPVSFV 610 620 630 640 650 660 RAPQGIGGQL FFQKHLELGQ MAGVRQLDAA LWPKHPELIE IAGPLGLLSA AQMNVVEFHT 670 680 690 700 710 720 WNGLKTLIGK PDRMTFDLDP GEGVGWPMVL QAAELMRVVL DELGLAPFCK TSGGKGLHVV 730 740 750 760 770 780 VPLKRQYDWD TIKDFSQAIV RHMARTLPQM FVAKSGPDNR VGRIFIDYLR NGFGATTICA 790 800 810 820 830 840 WSVRARPGMG VSVPVEWQEV PTLTSGAQWT LRNIHARLDR GNDPWAAYAK AAKSPGAAMK LLGFRVR

References

[1]

"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110." Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C. J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S110.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001635 Genomic DNA. Translation: ACS18310.1.
RefSeq	YP_002943576.1. NC_012791.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	543728.Vapar_1660.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACS18310; ACS18310; Vapar_1660.
GeneID	7974728.
KEGG	vap:Vapar_1660.
PATRIC	24003756. VBIVarPar36677_1683.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	VPAR543728:GHLL-1672-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5CTW0_VARPS

Accession

Primary (citable) accession number: C5CTW0

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	May 29, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)