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C5CSC6

- C5CSC6_VARPS

UniProt

C5CSC6 - C5CSC6_VARPS

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Protein
Phosphoenolpyruvate carboxylase
Gene
ppc, Vapar_1373
Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle By similarity.UniRule annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotations

Cofactori

Magnesium By similarity.UniRule annotationSAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei154 – 1541 By similarityUniRule annotation
Active sitei599 – 5991 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, PyruvateImported

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-1382-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotation
Ordered Locus Names:Vapar_1373Imported
OrganismiVariovorax paradoxus (strain S110)Imported
Taxonomic identifieri543728 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000000453: Chromosome 1

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi543728.Vapar_1373.

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2352.
HOGENOMiHOG000238647.
KOiK01595.
OMAiELSTISC.
OrthoDBiEOG6TJ7T8.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5CSC6-1 [UniParc]FASTAAdd to Basket

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MKASKTPAPP KRRQAEDQPL IDDIRLLGRI LGDVIREQEG EESYALVEKI    50
RTLSVAFRRD ADQAADRALK NLLKGLSAAE TVRVIRAFTY FSHLANLAED 100
RHLIRRRTEA ERAGESADGD LQTALARIRK AGVKPDEVVA SLARSYVSPV 150
LTAHPTEVQR KSILDAERAI AQLLTTRDEI KLRQSAYAGA KDALTPLEFA 200
ENETQMRIRV TQIWQTRLLR FSKLTVADEI ENALSYYEAT FLREIPRVYA 250
DLEKALGQGG VLPSVAPFLR MGQWIGGDRD GNPNVTAETL EYALRRQAEL 300
ALRHYLTEVH YLGGELSLSA TLVDVSVEMQ ALAARSPDTS EHRKDEPYRR 350
ALTGVYARLA ATLRDLTGGE AARHAVPPQN PYAKAEEFLD DLRTVEESLV 400
EKHGSVLAAP RLRPLIRAVE VFGFHLATVD LRQSSDKHEA VIAELLATAR 450
IEPAYASLAE EAKQTLLLKL LDDARPLRVP DAEYSPLAQS ELAIFAAART 500
ARARYGAAAI RHYIISHTET VSDLLEALLL QKEVGLLRGA MNGKATCDLI 550
VVPLFETIED LRNAAPIVRA FYALPNIQAL IERSGAEQDV MLGYSDSNKD 600
GGIFTSNWEL YRAGIALVAL FDELNKKKAN PIRLRMFHGR GGTVGRGGGP 650
SYQAILAQPP GTVRGQIRLT EQGEVIGSKY ANREIGRRNL ETLVAATLEA 700
TLLPQAKSAP ATFLSAAGEL STASMSAYRK LVYETPGFGD YFFGSTPIRE 750
IAELNIGSRP ASRNPSHKID DLRAVPWSFS WGQCRLTIPG WFGFGSGVEQ 800
FLASAATPAA RKERTALLRR MYAQWPFFRT LLSNMDMVLA KSDLALASRY 850
AELVTDRKLR QKVFSMIDTE WHRTSDALTL ITGAKQRLEG NAEMQRSVRH 900
RFPYIDPLHH LQVELMRRYR AGEGGERLQR GIHISINGVA AGLRNTG 947
Length:947
Mass (Da):104,960
Last modified:July 28, 2009 - v1
Checksum:i4DA0808176344CFE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001635 Genomic DNA. Translation: ACS18024.1.
RefSeqiYP_002943290.1. NC_012791.1.

Genome annotation databases

EnsemblBacteriaiACS18024; ACS18024; Vapar_1373.
GeneIDi7973054.
KEGGivap:Vapar_1373.
PATRICi24003170. VBIVarPar36677_1392.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001635 Genomic DNA. Translation: ACS18024.1 .
RefSeqi YP_002943290.1. NC_012791.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 543728.Vapar_1373.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS18024 ; ACS18024 ; Vapar_1373 .
GeneIDi 7973054.
KEGGi vap:Vapar_1373.
PATRICi 24003170. VBIVarPar36677_1392.

Phylogenomic databases

eggNOGi COG2352.
HOGENOMi HOG000238647.
KOi K01595.
OMAi ELSTISC.
OrthoDBi EOG6TJ7T8.

Enzyme and pathway databases

BioCyci VPAR543728:GHLL-1382-MONOMER.

Family and domain databases

HAMAPi MF_00595. PEPcase_type1.
InterProi IPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view ]
Pfami PF00311. PEPcase. 1 hit.
[Graphical view ]
PRINTSi PR00150. PEPCARBXLASE.
SUPFAMi SSF51621. SSF51621. 1 hit.
PROSITEi PS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S110.

Entry informationi

Entry nameiC5CSC6_VARPS
AccessioniPrimary (citable) accession number: C5CSC6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: June 11, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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