Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Ribulose-bisphosphate carboxylase

Gene

Vapar_3031

Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-3060-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylaseImported (EC:4.1.1.39Imported)
Gene namesi
Ordered Locus Names:Vapar_3031Imported
OrganismiVariovorax paradoxus (strain S110)Imported
Taxonomic identifieri543728 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000000453 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi543728.Vapar_3031.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG4451.
HOGENOMiHOG000141331.
KOiK01602.
OMAiYIPAVEF.
OrthoDBiEOG6RC3Q7.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR000894. RuBisCO_sc_dom.
[Graphical view]
PfamiPF00101. RuBisCO_small. 1 hit.
[Graphical view]
SMARTiSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

C5CPR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRITQGTFSF LPDLSDEQIS RQVEYCLGKG WAIGLEYTDD PHPRNTFWEM
60 70 80 90 100
FGNPMFDIKD AAGVMLELAA CRKTFPQQYI RVTAFDSTHG TESVVMSFIV
110 120 130
NRPSNEPGFR LIRTEEPGRT IRYSLESYAV QARPEGSRY
Length:139
Mass (Da):15,940
Last modified:July 28, 2009 - v1
Checksum:iAA0825143E594DFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS19650.1.
RefSeqiYP_002944916.1. NC_012791.1.

Genome annotation databases

EnsemblBacteriaiACS19650; ACS19650; Vapar_3031.
KEGGivap:Vapar_3031.
PATRICi24006471. VBIVarPar36677_3024.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS19650.1.
RefSeqiYP_002944916.1. NC_012791.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi543728.Vapar_3031.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS19650; ACS19650; Vapar_3031.
KEGGivap:Vapar_3031.
PATRICi24006471. VBIVarPar36677_3024.

Phylogenomic databases

eggNOGiCOG4451.
HOGENOMiHOG000141331.
KOiK01602.
OMAiYIPAVEF.
OrthoDBiEOG6RC3Q7.

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-3060-MONOMER.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR000894. RuBisCO_sc_dom.
[Graphical view]
PfamiPF00101. RuBisCO_small. 1 hit.
[Graphical view]
SMARTiSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMiSSF55239. SSF55239. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 193:1183-1190(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S110Imported.

Entry informationi

Entry nameiC5CPR1_VARPS
AccessioniPrimary (citable) accession number: C5CPR1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: April 1, 2015
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.