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C5CNA0 (C5CNA0_VARPS) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Vapar_4859 EMBL ACS21463.1
OrganismVariovorax paradoxus (strain S110) [Complete proteome] [HAMAP] EMBL ACS21463.1
Taxonomic identifier543728 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length551 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C5CNA0 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: 02CD66E57E20B6BF

FASTA55161,543
        10         20         30         40         50         60 
MKDFAALYRE LDASTSSLAK QAALQRYLRE ADPADAAWAV YFLAGGKPRQ LVPTKLLRLL 

        70         80         90        100        110        120 
AQEAAGLPEW LFDESYEAVG DLAETIALLL PPPTEAHDLG LARWVEEHLL PLREAGKAAP 

       130        140        150        160        170        180 
DELPARLRAQ WRQLAAEERL VYFKLITGAF RVGVSKLQVT QALAGVGGID PKRVAQRLMG 

       190        200        210        220        230        240 
YTHIGGRPRA EDYRALIAPE SGAEQVQKTS GQPYPFFLAH AFNLPLEQFD AVLGPPAGWI 

       250        260        270        280        290        300 
VEWKWDGIRA QLVKRAGASW LWSRGEELVT ERFPELAVLG DALPDGTVLD GEIAVWRDDR 

       310        320        330        340        350        360 
VQPFAELQKR IGRKTLGAKL LREIPVVLLA YDILEWEGRD LRALPQSERR LLLDELVTRM 

       370        380        390        400        410        420 
QHPSLLPSPM LTGIAWSDFA RQREAARSLG VEGMMLKRRD AQYGVGRTKD VGVWWKWKID 

       430        440        450        460        470        480 
PLSIDAVLVY AQRGHGRRAS LYSDYTFAVW DGPPEQGDRK LVPFAKAYSG LTDAEMARVD 

       490        500        510        520        530        540 
AIIRKTTVES FGPVKSVKPT LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD 

       550 
TLQTLAALLP S 

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References

[1]"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001635 Genomic DNA. Translation: ACS21463.1.
RefSeqYP_002946729.1. NC_012791.1.

3D structure databases

ProteinModelPortalC5CNA0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING543728.Vapar_4859.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS21463; ACS21463; Vapar_4859.
GeneID7971553.
KEGGvap:Vapar_4859.
PATRIC24010193. VBIVarPar36677_4859.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMARVWLWSR.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycVPAR543728:GHLL-4915-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5CNA0_VARPS
AccessionPrimary (citable) accession number: C5CNA0
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)