C5CNA0 (C5CNA0_VARPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACS21463.1

Gene names

Ordered Locus Names:

Vapar_4859

Organism

Variovorax paradoxus (strain S110) [Complete proteome] [HAMAP]

Taxonomic identifier

543728 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Variovorax › Variovorax paradoxus

Protein attributes

Sequence length	551 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACS21463.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5CNA0 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: 02CD66E57E20B6BF	FASTA	551	61,543
	10 20 30 40 50 60 MKDFAALYRE LDASTSSLAK QAALQRYLRE ADPADAAWAV YFLAGGKPRQ LVPTKLLRLL 70 80 90 100 110 120 AQEAAGLPEW LFDESYEAVG DLAETIALLL PPPTEAHDLG LARWVEEHLL PLREAGKAAP 130 140 150 160 170 180 DELPARLRAQ WRQLAAEERL VYFKLITGAF RVGVSKLQVT QALAGVGGID PKRVAQRLMG 190 200 210 220 230 240 YTHIGGRPRA EDYRALIAPE SGAEQVQKTS GQPYPFFLAH AFNLPLEQFD AVLGPPAGWI 250 260 270 280 290 300 VEWKWDGIRA QLVKRAGASW LWSRGEELVT ERFPELAVLG DALPDGTVLD GEIAVWRDDR 310 320 330 340 350 360 VQPFAELQKR IGRKTLGAKL LREIPVVLLA YDILEWEGRD LRALPQSERR LLLDELVTRM 370 380 390 400 410 420 QHPSLLPSPM LTGIAWSDFA RQREAARSLG VEGMMLKRRD AQYGVGRTKD VGVWWKWKID 430 440 450 460 470 480 PLSIDAVLVY AQRGHGRRAS LYSDYTFAVW DGPPEQGDRK LVPFAKAYSG LTDAEMARVD 490 500 510 520 530 540 AIIRKTTVES FGPVKSVKPT LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD 550 TLQTLAALLP S

References

[1]

"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110." Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C. J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S110.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001635 Genomic DNA. Translation: ACS21463.1.
RefSeq	YP_002946729.1. NC_012791.1.
3D structure databases
ProteinModelPortal	C5CNA0.
ModBase	Search...
Protein-protein interaction databases
STRING	543728.Vapar_4859.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACS21463; ACS21463; Vapar_4859.
GeneID	7971553.
KEGG	vap:Vapar_4859.
PATRIC	24010193. VBIVarPar36677_4859.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5CNA0_VARPS

Accession

Primary (citable) accession number: C5CNA0

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)