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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Vapar_4859

Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-4915-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Vapar_4859Imported
OrganismiVariovorax paradoxus (strain S110)Imported
Taxonomic identifieri543728 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000000453: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi543728.Vapar_4859.

Structurei

3D structure databases

ProteinModelPortaliC5CNA0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5CNA0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDFAALYRE LDASTSSLAK QAALQRYLRE ADPADAAWAV YFLAGGKPRQ
60 70 80 90 100
LVPTKLLRLL AQEAAGLPEW LFDESYEAVG DLAETIALLL PPPTEAHDLG
110 120 130 140 150
LARWVEEHLL PLREAGKAAP DELPARLRAQ WRQLAAEERL VYFKLITGAF
160 170 180 190 200
RVGVSKLQVT QALAGVGGID PKRVAQRLMG YTHIGGRPRA EDYRALIAPE
210 220 230 240 250
SGAEQVQKTS GQPYPFFLAH AFNLPLEQFD AVLGPPAGWI VEWKWDGIRA
260 270 280 290 300
QLVKRAGASW LWSRGEELVT ERFPELAVLG DALPDGTVLD GEIAVWRDDR
310 320 330 340 350
VQPFAELQKR IGRKTLGAKL LREIPVVLLA YDILEWEGRD LRALPQSERR
360 370 380 390 400
LLLDELVTRM QHPSLLPSPM LTGIAWSDFA RQREAARSLG VEGMMLKRRD
410 420 430 440 450
AQYGVGRTKD VGVWWKWKID PLSIDAVLVY AQRGHGRRAS LYSDYTFAVW
460 470 480 490 500
DGPPEQGDRK LVPFAKAYSG LTDAEMARVD AIIRKTTVES FGPVKSVKPT
510 520 530 540 550
LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD TLQTLAALLP

S
Length:551
Mass (Da):61,543
Last modified:July 28, 2009 - v1
Checksum:i02CD66E57E20B6BF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS21463.1.
RefSeqiYP_002946729.1. NC_012791.1.

Genome annotation databases

EnsemblBacteriaiACS21463; ACS21463; Vapar_4859.
GeneIDi7971553.
KEGGivap:Vapar_4859.
PATRICi24010193. VBIVarPar36677_4859.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS21463.1.
RefSeqiYP_002946729.1. NC_012791.1.

3D structure databases

ProteinModelPortaliC5CNA0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi543728.Vapar_4859.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS21463; ACS21463; Vapar_4859.
GeneIDi7971553.
KEGGivap:Vapar_4859.
PATRICi24010193. VBIVarPar36677_4859.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-4915-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S110Imported.

Entry informationi

Entry nameiC5CNA0_VARPS
AccessioniPrimary (citable) accession number: C5CNA0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: March 4, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.