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C5CM41

- C5CM41_VARPS

UniProt

C5CM41 - C5CM41_VARPS

Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

Vapar_4695

Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. 4-aminobutyrate transaminase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. gamma-aminobutyric acid metabolic process Source: InterPro

    Keywords - Molecular functioni

    AminotransferaseImported, Transferase

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Enzyme and pathway databases

    BioCyciVPAR543728:GHLL-4740-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    4-aminobutyrate aminotransferaseImported
    Gene namesi
    Ordered Locus Names:Vapar_4695Imported
    OrganismiVariovorax paradoxus (strain S110)Imported
    Taxonomic identifieri543728 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000000453: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi543728.Vapar_4695.

    Structurei

    3D structure databases

    ProteinModelPortaliC5CM41.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0160.
    HOGENOMiHOG000020206.
    KOiK07250.
    OMAiVMCDFFA.
    OrthoDBiEOG6QVRHN.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR004632. 4NH2But_aminotransferase_bac.
    IPR005814. Aminotrans_3.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PANTHERiPTHR11986. PTHR11986. 1 hit.
    PfamiPF00202. Aminotran_3. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
    PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C5CM41-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQREPHLSNA ALMARRNAAV ARGVGQAHEI FVSRAANAEV WDVEGRRYID    50
    FAGGIAVLNT GHCHPEISAA VKAQVDLYSH TCFQVLAYEP YVELAERLNA 100
    LAPGNFAKKS IFLSTGAEAV ENAVKIARAH TRRPGVIAFN GGYHGRTMMT 150
    LGLTGKVAPY KLGFGPFPGE VFHALYPNVL HGVSVDDALH SVELLFKNDI 200
    EPERVAAFIL EPVQGEGGFY VAPNDFVEGL RALADRHGIL IIADEVQTGA 250
    GRTGTWFASE QWPVAPDLIT TAKSMAGGFP ISGVVGRAEV MDAPAPGGLG 300
    GTYAGSPIGC AAALAVLKVF DDEQLLARSR ALGGRLTAGL RRIAAGVPAI 350
    GDVRGLGAMV AIELFEDGDT ARPDAGLTRR VVAEAARRGL ILLSCGTYGN 400
    VIRVLVPLTA SDLLVDEGLA LLADSFAALR 430
    Length:430
    Mass (Da):45,308
    Last modified:July 28, 2009 - v1
    Checksum:i6CCB5DF036D5C2CD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS21300.1.
    RefSeqiYP_002946566.1. NC_012791.1.

    Genome annotation databases

    EnsemblBacteriaiACS21300; ACS21300; Vapar_4695.
    GeneIDi7971705.
    KEGGivap:Vapar_4695.
    PATRICi24009825. VBIVarPar36677_4686.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS21300.1 .
    RefSeqi YP_002946566.1. NC_012791.1.

    3D structure databases

    ProteinModelPortali C5CM41.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 543728.Vapar_4695.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACS21300 ; ACS21300 ; Vapar_4695 .
    GeneIDi 7971705.
    KEGGi vap:Vapar_4695.
    PATRICi 24009825. VBIVarPar36677_4686.

    Phylogenomic databases

    eggNOGi COG0160.
    HOGENOMi HOG000020206.
    KOi K07250.
    OMAi VMCDFFA.
    OrthoDBi EOG6QVRHN.

    Enzyme and pathway databases

    BioCyci VPAR543728:GHLL-4740-MONOMER.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR004632. 4NH2But_aminotransferase_bac.
    IPR005814. Aminotrans_3.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    PANTHERi PTHR11986. PTHR11986. 1 hit.
    Pfami PF00202. Aminotran_3. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR00700. GABAtrnsam. 1 hit.
    PROSITEi PS00600. AA_TRANSFER_CLASS_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
      Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
      J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S110Imported.

    Entry informationi

    Entry nameiC5CM41_VARPS
    AccessioniPrimary (citable) accession number: C5CM41
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3