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Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

Vapar_4695

Organism
Variovorax paradoxus (strain S110)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. 4-aminobutyrate transaminase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. gamma-aminobutyric acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-4740-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
4-aminobutyrate aminotransferaseImported
Gene namesi
Ordered Locus Names:Vapar_4695Imported
OrganismiVariovorax paradoxus (strain S110)Imported
Taxonomic identifieri543728 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000000453 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi543728.Vapar_4695.

Structurei

3D structure databases

ProteinModelPortaliC5CM41.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK07250.
OMAiPEGNHYL.
OrthoDBiEOG6QVRHN.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5CM41-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQREPHLSNA ALMARRNAAV ARGVGQAHEI FVSRAANAEV WDVEGRRYID
60 70 80 90 100
FAGGIAVLNT GHCHPEISAA VKAQVDLYSH TCFQVLAYEP YVELAERLNA
110 120 130 140 150
LAPGNFAKKS IFLSTGAEAV ENAVKIARAH TRRPGVIAFN GGYHGRTMMT
160 170 180 190 200
LGLTGKVAPY KLGFGPFPGE VFHALYPNVL HGVSVDDALH SVELLFKNDI
210 220 230 240 250
EPERVAAFIL EPVQGEGGFY VAPNDFVEGL RALADRHGIL IIADEVQTGA
260 270 280 290 300
GRTGTWFASE QWPVAPDLIT TAKSMAGGFP ISGVVGRAEV MDAPAPGGLG
310 320 330 340 350
GTYAGSPIGC AAALAVLKVF DDEQLLARSR ALGGRLTAGL RRIAAGVPAI
360 370 380 390 400
GDVRGLGAMV AIELFEDGDT ARPDAGLTRR VVAEAARRGL ILLSCGTYGN
410 420 430
VIRVLVPLTA SDLLVDEGLA LLADSFAALR
Length:430
Mass (Da):45,308
Last modified:July 28, 2009 - v1
Checksum:i6CCB5DF036D5C2CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS21300.1.
RefSeqiYP_002946566.1. NC_012791.1.

Genome annotation databases

EnsemblBacteriaiACS21300; ACS21300; Vapar_4695.
KEGGivap:Vapar_4695.
PATRICi24009825. VBIVarPar36677_4686.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS21300.1.
RefSeqiYP_002946566.1. NC_012791.1.

3D structure databases

ProteinModelPortaliC5CM41.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi543728.Vapar_4695.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS21300; ACS21300; Vapar_4695.
KEGGivap:Vapar_4695.
PATRICi24009825. VBIVarPar36677_4686.

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK07250.
OMAiPEGNHYL.
OrthoDBiEOG6QVRHN.

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-4740-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S110Imported.

Entry informationi

Entry nameiC5CM41_VARPS
AccessioniPrimary (citable) accession number: C5CM41
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: April 1, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.