C5CM41 (C5CM41_VARPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ACS21300.1

Gene names

Ordered Locus Names:

Vapar_4695

Organism

Variovorax paradoxus (strain S110) [Complete proteome] [HAMAP]

Taxonomic identifier

543728 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Variovorax › Variovorax paradoxus

Protein attributes

Sequence length	430 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ACS21300.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5CM41 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: 6CCB5DF036D5C2CD	FASTA	430	45,308
	10 20 30 40 50 60 MQREPHLSNA ALMARRNAAV ARGVGQAHEI FVSRAANAEV WDVEGRRYID FAGGIAVLNT 70 80 90 100 110 120 GHCHPEISAA VKAQVDLYSH TCFQVLAYEP YVELAERLNA LAPGNFAKKS IFLSTGAEAV 130 140 150 160 170 180 ENAVKIARAH TRRPGVIAFN GGYHGRTMMT LGLTGKVAPY KLGFGPFPGE VFHALYPNVL 190 200 210 220 230 240 HGVSVDDALH SVELLFKNDI EPERVAAFIL EPVQGEGGFY VAPNDFVEGL RALADRHGIL 250 260 270 280 290 300 IIADEVQTGA GRTGTWFASE QWPVAPDLIT TAKSMAGGFP ISGVVGRAEV MDAPAPGGLG 310 320 330 340 350 360 GTYAGSPIGC AAALAVLKVF DDEQLLARSR ALGGRLTAGL RRIAAGVPAI GDVRGLGAMV 370 380 390 400 410 420 AIELFEDGDT ARPDAGLTRR VVAEAARRGL ILLSCGTYGN VIRVLVPLTA SDLLVDEGLA 430 LLADSFAALR

References

[1]

"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110." Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C. J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S110.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001635 Genomic DNA. Translation: ACS21300.1.
RefSeq	YP_002946566.1. NC_012791.1.
3D structure databases
ProteinModelPortal	C5CM41.
ModBase	Search...
Protein-protein interaction databases
STRING	543728.Vapar_4695.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACS21300; ACS21300; Vapar_4695.
GeneID	7971705.
KEGG	vap:Vapar_4695.
PATRIC	24009825. VBIVarPar36677_4686.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K07250.
OMA	EAIASIH.
ProtClustDB	CLSK721535.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5CM41_VARPS

Accession

Primary (citable) accession number: C5CM41

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	April 3, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)