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C5CM41 (C5CM41_VARPS) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Vapar_4695 EMBL ACS21300.1
OrganismVariovorax paradoxus (strain S110) [Complete proteome] [HAMAP] EMBL ACS21300.1
Taxonomic identifier543728 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length430 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
C5CM41 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: 6CCB5DF036D5C2CD

FASTA43045,308
        10         20         30         40         50         60 
MQREPHLSNA ALMARRNAAV ARGVGQAHEI FVSRAANAEV WDVEGRRYID FAGGIAVLNT 

        70         80         90        100        110        120 
GHCHPEISAA VKAQVDLYSH TCFQVLAYEP YVELAERLNA LAPGNFAKKS IFLSTGAEAV 

       130        140        150        160        170        180 
ENAVKIARAH TRRPGVIAFN GGYHGRTMMT LGLTGKVAPY KLGFGPFPGE VFHALYPNVL 

       190        200        210        220        230        240 
HGVSVDDALH SVELLFKNDI EPERVAAFIL EPVQGEGGFY VAPNDFVEGL RALADRHGIL 

       250        260        270        280        290        300 
IIADEVQTGA GRTGTWFASE QWPVAPDLIT TAKSMAGGFP ISGVVGRAEV MDAPAPGGLG 

       310        320        330        340        350        360 
GTYAGSPIGC AAALAVLKVF DDEQLLARSR ALGGRLTAGL RRIAAGVPAI GDVRGLGAMV 

       370        380        390        400        410        420 
AIELFEDGDT ARPDAGLTRR VVAEAARRGL ILLSCGTYGN VIRVLVPLTA SDLLVDEGLA 

       430 
LLADSFAALR 

« Hide

References

[1]"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001635 Genomic DNA. Translation: ACS21300.1.
RefSeqYP_002946566.1. NC_012791.1.

3D structure databases

ProteinModelPortalC5CM41.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING543728.Vapar_4695.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS21300; ACS21300; Vapar_4695.
GeneID7971705.
KEGGvap:Vapar_4695.
PATRIC24009825. VBIVarPar36677_4686.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0160.
HOGENOMHOG000020206.
KOK07250.
OMAVMCDFFA.
OrthoDBEOG6QVRHN.

Enzyme and pathway databases

BioCycVPAR543728:GHLL-4740-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR00700. GABAtrnsam. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5CM41_VARPS
AccessionPrimary (citable) accession number: C5CM41
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: May 14, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)