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Protein

Glycogen synthase

Gene

glgA

Organism
Variovorax paradoxus (strain S110)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Synthesizes alpha-1,4-glucan chains using ADP-glucose.UniRule annotation

Catalytic activityi

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1).UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei15 – 151ADP-glucoseUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Glycogen biosynthesis

Enzyme and pathway databases

BioCyciVPAR543728:GHLL-413-MONOMER.
UniPathwayiUPA00164.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycogen synthaseUniRule annotation (EC:2.4.1.21UniRule annotation)
Alternative name(s):
Starch [bacterial glycogen] synthaseUniRule annotation
Gene namesi
Name:glgAUniRule annotation
Ordered Locus Names:Vapar_0412
OrganismiVariovorax paradoxus (strain S110)
Taxonomic identifieri543728 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
ProteomesiUP000000453 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 495495Glycogen synthasePRO_1000206435Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi543728.Vapar_0412.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0297.
HOGENOMiHOG000294941.
KOiK00703.
OMAiQQLYCKV.
OrthoDBiEOG6JTC6Z.

Family and domain databases

HAMAPiMF_00484. Glycogen_synth.
InterProiIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamiPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02095. glgA. 1 hit.

Sequencei

Sequence statusi: Complete.

C5CJ75-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRILQVSAEL FPLLKTGGLA DVAGALPLAL MAAGQDARVL LPGFPAILAG
60 70 80 90 100
VRELAPVAEF TAPWGPERFG LRAGRIAIDG AAAPITAYVI DAPVLYDRPG
110 120 130 140 150
NPYEDATRQP YGDNHRRFAL LGWAAAQLAQ GLDPAWQPEV VHAHDWHAGL
160 170 180 190 200
APAYLHFARE AGLTRTGSVF TVHNLAYQGI SAPWNFADLG LPAPAFHMNG
210 220 230 240 250
LEYHGQVSFM KGGLYFADRL TTVSPTYARE IQTPEQGFGL DGLLRLRGGV
260 270 280 290 300
LTGILNAVDD EVWNPATDSA LVQGYHTPDG RHMAGKARCK AVLQHQLGLA
310 320 330 340 350
ERPDAPLFIL VSRLTEQKGL HLVLGGLDTL LAEGGQLALL GSGEAGLEQA
360 370 380 390 400
FRERAAAAPR AVSVTIGYNE TLAHQLFGGG DVTLVPSLFE PCGLTQMYGL
410 420 430 440 450
KYGSLPLVRR VGGLADTVVD CTLEDMASGH ATGFVFDRFD AADYDRALRR
460 470 480 490
AFALYQRAPD WRRVRGNAMR RPADWASAAG QYIEVYRQAL ESAGT
Length:495
Mass (Da):53,194
Last modified:July 28, 2009 - v1
Checksum:i546E148BFFB81217
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS17075.1.
RefSeqiWP_012745575.1. NC_012791.1.
YP_002942341.1. NC_012791.1.

Genome annotation databases

EnsemblBacteriaiACS17075; ACS17075; Vapar_0412.
KEGGivap:Vapar_0412.
PATRICi24001214. VBIVarPar36677_0421.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001635 Genomic DNA. Translation: ACS17075.1.
RefSeqiWP_012745575.1. NC_012791.1.
YP_002942341.1. NC_012791.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi543728.Vapar_0412.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS17075; ACS17075; Vapar_0412.
KEGGivap:Vapar_0412.
PATRICi24001214. VBIVarPar36677_0421.

Phylogenomic databases

eggNOGiCOG0297.
HOGENOMiHOG000294941.
KOiK00703.
OMAiQQLYCKV.
OrthoDBiEOG6JTC6Z.

Enzyme and pathway databases

UniPathwayiUPA00164.
BioCyciVPAR543728:GHLL-413-MONOMER.

Family and domain databases

HAMAPiMF_00484. Glycogen_synth.
InterProiIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamiPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02095. glgA. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
    Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
    J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S110.

Entry informationi

Entry nameiGLGA_VARPS
AccessioniPrimary (citable) accession number: C5CJ75
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: July 28, 2009
Last modified: April 29, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.