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C5CJ75

- GLGA_VARPS

UniProt

C5CJ75 - GLGA_VARPS

Protein

Glycogen synthase

Gene

glgA

Organism
Variovorax paradoxus (strain S110)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    Synthesizes alpha-1,4-glucan chains using ADP-glucose.UniRule annotation

    Catalytic activityi

    ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1).UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei15 – 151ADP-glucoseUniRule annotation

    GO - Molecular functioni

    1. starch synthase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Glycogen biosynthesis

    Enzyme and pathway databases

    BioCyciVPAR543728:GHLL-413-MONOMER.
    UniPathwayiUPA00164.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycogen synthaseUniRule annotation (EC:2.4.1.21UniRule annotation)
    Alternative name(s):
    Starch [bacterial glycogen] synthaseUniRule annotation
    Gene namesi
    Name:glgAUniRule annotation
    Ordered Locus Names:Vapar_0412
    OrganismiVariovorax paradoxus (strain S110)
    Taxonomic identifieri543728 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax
    ProteomesiUP000000453: Chromosome 1

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 495495Glycogen synthasePRO_1000206435Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi543728.Vapar_0412.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0297.
    HOGENOMiHOG000294941.
    KOiK00703.
    OMAiPYHDESQ.
    OrthoDBiEOG6JTC6Z.

    Family and domain databases

    HAMAPiMF_00484. Glycogen_synth.
    InterProiIPR001296. Glyco_trans_1.
    IPR011835. Glycogen/starch_synth.
    IPR013534. Starch_synth_cat_dom.
    [Graphical view]
    PfamiPF08323. Glyco_transf_5. 1 hit.
    PF00534. Glycos_transf_1. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02095. glgA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C5CJ75-1 [UniParc]FASTAAdd to Basket

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    MRILQVSAEL FPLLKTGGLA DVAGALPLAL MAAGQDARVL LPGFPAILAG    50
    VRELAPVAEF TAPWGPERFG LRAGRIAIDG AAAPITAYVI DAPVLYDRPG 100
    NPYEDATRQP YGDNHRRFAL LGWAAAQLAQ GLDPAWQPEV VHAHDWHAGL 150
    APAYLHFARE AGLTRTGSVF TVHNLAYQGI SAPWNFADLG LPAPAFHMNG 200
    LEYHGQVSFM KGGLYFADRL TTVSPTYARE IQTPEQGFGL DGLLRLRGGV 250
    LTGILNAVDD EVWNPATDSA LVQGYHTPDG RHMAGKARCK AVLQHQLGLA 300
    ERPDAPLFIL VSRLTEQKGL HLVLGGLDTL LAEGGQLALL GSGEAGLEQA 350
    FRERAAAAPR AVSVTIGYNE TLAHQLFGGG DVTLVPSLFE PCGLTQMYGL 400
    KYGSLPLVRR VGGLADTVVD CTLEDMASGH ATGFVFDRFD AADYDRALRR 450
    AFALYQRAPD WRRVRGNAMR RPADWASAAG QYIEVYRQAL ESAGT 495
    Length:495
    Mass (Da):53,194
    Last modified:July 28, 2009 - v1
    Checksum:i546E148BFFB81217
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS17075.1.
    RefSeqiWP_012745575.1. NC_012791.1.
    YP_002942341.1. NC_012791.1.

    Genome annotation databases

    EnsemblBacteriaiACS17075; ACS17075; Vapar_0412.
    GeneIDi7970153.
    KEGGivap:Vapar_0412.
    PATRICi24001214. VBIVarPar36677_0421.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001635 Genomic DNA. Translation: ACS17075.1 .
    RefSeqi WP_012745575.1. NC_012791.1.
    YP_002942341.1. NC_012791.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 543728.Vapar_0412.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACS17075 ; ACS17075 ; Vapar_0412 .
    GeneIDi 7970153.
    KEGGi vap:Vapar_0412.
    PATRICi 24001214. VBIVarPar36677_0421.

    Phylogenomic databases

    eggNOGi COG0297.
    HOGENOMi HOG000294941.
    KOi K00703.
    OMAi PYHDESQ.
    OrthoDBi EOG6JTC6Z.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci VPAR543728:GHLL-413-MONOMER.

    Family and domain databases

    HAMAPi MF_00484. Glycogen_synth.
    InterProi IPR001296. Glyco_trans_1.
    IPR011835. Glycogen/starch_synth.
    IPR013534. Starch_synth_cat_dom.
    [Graphical view ]
    Pfami PF08323. Glyco_transf_5. 1 hit.
    PF00534. Glycos_transf_1. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02095. glgA. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
      Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
      J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S110.

    Entry informationi

    Entry nameiGLGA_VARPS
    AccessioniPrimary (citable) accession number: C5CJ75
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 22, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3