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C5CJ75 (GLGA_VARPS) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycogen synthase

EC=2.4.1.21
Alternative name(s):
Starch [bacterial glycogen] synthase
Gene names
Name:glgA
Ordered Locus Names:Vapar_0412
OrganismVariovorax paradoxus (strain S110) [Complete proteome] [HAMAP]
Taxonomic identifier543728 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeVariovorax

Protein attributes

Sequence length495 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes alpha-1,4-glucan chains using ADP-glucose By similarity. HAMAP-Rule MF_00484

Catalytic activity

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1). HAMAP-Rule MF_00484

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00484

Sequence similarities

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.

Ontologies

Keywords
   Biological processGlycogen biosynthesis
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglycogen biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionstarch synthase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 495495Glycogen synthase HAMAP-Rule MF_00484
PRO_1000206435

Sites

Binding site151ADP-glucose By similarity

Sequences

Sequence LengthMass (Da)Tools
C5CJ75 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: 546E148BFFB81217

FASTA49553,194
        10         20         30         40         50         60 
MRILQVSAEL FPLLKTGGLA DVAGALPLAL MAAGQDARVL LPGFPAILAG VRELAPVAEF 

        70         80         90        100        110        120 
TAPWGPERFG LRAGRIAIDG AAAPITAYVI DAPVLYDRPG NPYEDATRQP YGDNHRRFAL 

       130        140        150        160        170        180 
LGWAAAQLAQ GLDPAWQPEV VHAHDWHAGL APAYLHFARE AGLTRTGSVF TVHNLAYQGI 

       190        200        210        220        230        240 
SAPWNFADLG LPAPAFHMNG LEYHGQVSFM KGGLYFADRL TTVSPTYARE IQTPEQGFGL 

       250        260        270        280        290        300 
DGLLRLRGGV LTGILNAVDD EVWNPATDSA LVQGYHTPDG RHMAGKARCK AVLQHQLGLA 

       310        320        330        340        350        360 
ERPDAPLFIL VSRLTEQKGL HLVLGGLDTL LAEGGQLALL GSGEAGLEQA FRERAAAAPR 

       370        380        390        400        410        420 
AVSVTIGYNE TLAHQLFGGG DVTLVPSLFE PCGLTQMYGL KYGSLPLVRR VGGLADTVVD 

       430        440        450        460        470        480 
CTLEDMASGH ATGFVFDRFD AADYDRALRR AFALYQRAPD WRRVRGNAMR RPADWASAAG 

       490 
QYIEVYRQAL ESAGT 

« Hide

References

[1]"Complete genome sequence of the metabolically versatile plant growth-promoting endophyte, Variovorax paradoxus S110."
Han J.I., Choi H.K., Lee S.W., Orwin P.M., Kim J., Laroe S.L., Kim T.G., O'Neil J., Leadbetter J.R., Lee S.Y., Hur C.G., Spain J.C., Ovchinnikova G., Goodwin L., Han C.
J. Bacteriol. 193:1183-1190(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001635 Genomic DNA. Translation: ACS17075.1.
RefSeqYP_002942341.1. NC_012791.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING543728.Vapar_0412.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS17075; ACS17075; Vapar_0412.
GeneID7970153.
KEGGvap:Vapar_0412.
PATRIC24001214. VBIVarPar36677_0421.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0297.
HOGENOMHOG000294941.
KOK00703.
OMAPYHDESQ.
OrthoDBEOG6JTC6Z.

Enzyme and pathway databases

BioCycVPAR543728:GHLL-413-MONOMER.
UniPathwayUPA00164.

Family and domain databases

HAMAPMF_00484. Glycogen_synth.
InterProIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR02095. glgA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGA_VARPS
AccessionPrimary (citable) accession number: C5CJ75
Entry history
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: July 28, 2009
Last modified: May 14, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways