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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Bcav_0653

Organism
Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBCAV471853:GI1Z-662-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Bcav_0653Imported
OrganismiBeutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)Imported
Taxonomic identifieri471853 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeBeutenbergiaceaeBeutenbergia
ProteomesiUP000007962: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471853.Bcav_0653.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5BY21-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAAGDGGARV RVDGRVLSLT NLDKVLFPAT GTTKAELIDY YRRIAPVMIP
60 70 80 90 100
HLAGRAVTRK RWPNGVETEP FFTKNLDSGT PDWVPRRGIV HHERTSTYPL
110 120 130 140 150
VEDTATLVWL AQMASIELHV PQWRFPPGDS PFVLDGSATR PDRFVLDLDP
160 170 180 190 200
GPGVGLAQCA EVALAAKGYL DDVGLAAIPV TSGSKGLHLY ATIHGVSSEQ
210 220 230 240 250
ASAFAKELAG HLAEDLPQLV VTQMKRSLRD GKVFVDYSQN NAAKTTVSPY
260 270 280 290 300
SVRGRDQPWV AAPRTWGELG EPGLAHLELG EVLERAADGD LLAPLLPPDP
310 320 330 340 350
LSTYRAKRDS ARTPEPVPFA APVAAPAGDP RFVIQEHHAR RLHWDLRLEH
360 370 380 390 400
DGVLASWAVP RGVPTTTGHN RLAVHTEDHP MEYLTFHGSI PKGEYGGGEM
410 420 430 440 450
TVWDTGTYTP EKFRDDEVIF VLHGQRVQGR FALIRTDPGR GGGKEQWLLH
460 470 480 490 500
LMKDQSGVAT SPEKRAHAVV DAPDAAADDG AHISLSDAVE PRRIAPDLRP
510 520 530 540 550
MLATAGQVGD GDYPAREWAF EPKWDGYRAL VRFSARGVAL QSRSGRDFTQ
560 570 580 590 600
EFAELAVVPE ELAAHAGVLD AEIVALDAAG RPSFHALQER GTGARPAMRL
610 620 630 640 650
LVFDVLHLDG TSLVNKRYSD RRQVLLALPL PAADPDHLGR EERDVGGWRR
660 670 680 690 700
SVTIGTSVRA ALRASAEARL EGVIAKRLDA RYLPGRRGHA WVKLKHSLDA
710 720 730 740 750
EVVIGGWRPG QGRRAGGIGS LLLGVPDDDG GLRYVGKVGT GFTDAALDAL
760 770 780 790 800
LATLEPRERT TSPFTTEVPR VEAKVAHWVR PDVVGEVTFD SWTDDGVLRA
810
ARWRGLRPDK APADLA
Length:816
Mass (Da):88,722
Last modified:July 28, 2009 - v1
Checksum:iE544CDD9BA9970E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001618 Genomic DNA. Translation: ACQ78915.1.
RefSeqiYP_002880677.1. NC_012669.1.

Genome annotation databases

EnsemblBacteriaiACQ78915; ACQ78915; Bcav_0653.
GeneIDi7858454.
KEGGibcv:Bcav_0653.
PATRICi21091867. VBIBeuCav91323_0665.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001618 Genomic DNA. Translation: ACQ78915.1.
RefSeqiYP_002880677.1. NC_012669.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi471853.Bcav_0653.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACQ78915; ACQ78915; Bcav_0653.
GeneIDi7858454.
KEGGibcv:Bcav_0653.
PATRICi21091867. VBIBeuCav91323_0665.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBCAV471853:GI1Z-662-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-8 / DSM 12333 / NBRC 16432Imported.

Entry informationi

Entry nameiC5BY21_BEUC1
AccessioniPrimary (citable) accession number: C5BY21
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: January 7, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.