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C5BY21

- C5BY21_BEUC1

UniProt

C5BY21 - C5BY21_BEUC1

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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene
Bcav_0653
Organism
Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBCAV471853:GI1Z-662-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Bcav_0653Imported
OrganismiBeutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)Imported
Taxonomic identifieri471853 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeBeutenbergiaceaeBeutenbergia
ProteomesiUP000007962: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471853.Bcav_0653.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5BY21-1 [UniParc]FASTAAdd to Basket

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MAAGDGGARV RVDGRVLSLT NLDKVLFPAT GTTKAELIDY YRRIAPVMIP    50
HLAGRAVTRK RWPNGVETEP FFTKNLDSGT PDWVPRRGIV HHERTSTYPL 100
VEDTATLVWL AQMASIELHV PQWRFPPGDS PFVLDGSATR PDRFVLDLDP 150
GPGVGLAQCA EVALAAKGYL DDVGLAAIPV TSGSKGLHLY ATIHGVSSEQ 200
ASAFAKELAG HLAEDLPQLV VTQMKRSLRD GKVFVDYSQN NAAKTTVSPY 250
SVRGRDQPWV AAPRTWGELG EPGLAHLELG EVLERAADGD LLAPLLPPDP 300
LSTYRAKRDS ARTPEPVPFA APVAAPAGDP RFVIQEHHAR RLHWDLRLEH 350
DGVLASWAVP RGVPTTTGHN RLAVHTEDHP MEYLTFHGSI PKGEYGGGEM 400
TVWDTGTYTP EKFRDDEVIF VLHGQRVQGR FALIRTDPGR GGGKEQWLLH 450
LMKDQSGVAT SPEKRAHAVV DAPDAAADDG AHISLSDAVE PRRIAPDLRP 500
MLATAGQVGD GDYPAREWAF EPKWDGYRAL VRFSARGVAL QSRSGRDFTQ 550
EFAELAVVPE ELAAHAGVLD AEIVALDAAG RPSFHALQER GTGARPAMRL 600
LVFDVLHLDG TSLVNKRYSD RRQVLLALPL PAADPDHLGR EERDVGGWRR 650
SVTIGTSVRA ALRASAEARL EGVIAKRLDA RYLPGRRGHA WVKLKHSLDA 700
EVVIGGWRPG QGRRAGGIGS LLLGVPDDDG GLRYVGKVGT GFTDAALDAL 750
LATLEPRERT TSPFTTEVPR VEAKVAHWVR PDVVGEVTFD SWTDDGVLRA 800
ARWRGLRPDK APADLA 816
Length:816
Mass (Da):88,722
Last modified:July 28, 2009 - v1
Checksum:iE544CDD9BA9970E9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001618 Genomic DNA. Translation: ACQ78915.1.
RefSeqiWP_012725695.1. NC_012669.1.
YP_002880677.1. NC_012669.1.

Genome annotation databases

EnsemblBacteriaiACQ78915; ACQ78915; Bcav_0653.
GeneIDi7858454.
KEGGibcv:Bcav_0653.
PATRICi21091867. VBIBeuCav91323_0665.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001618 Genomic DNA. Translation: ACQ78915.1 .
RefSeqi WP_012725695.1. NC_012669.1.
YP_002880677.1. NC_012669.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 471853.Bcav_0653.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACQ78915 ; ACQ78915 ; Bcav_0653 .
GeneIDi 7858454.
KEGGi bcv:Bcav_0653.
PATRICi 21091867. VBIBeuCav91323_0665.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BCAV471853:GI1Z-662-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-8 / DSM 12333 / NBRC 16432.

Entry informationi

Entry nameiC5BY21_BEUC1
AccessioniPrimary (citable) accession number: C5BY21
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: September 3, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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