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C5BY21

- C5BY21_BEUC1

UniProt

C5BY21 - C5BY21_BEUC1

Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Bcav_0653

Organism
Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Enzyme and pathway databases

    BioCyciBCAV471853:GI1Z-662-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, polymerase domain proteinImported
    Gene namesi
    Ordered Locus Names:Bcav_0653Imported
    OrganismiBeutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)Imported
    Taxonomic identifieri471853 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeBeutenbergiaceaeBeutenbergia
    ProteomesiUP000007962: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi471853.Bcav_0653.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C5BY21-1 [UniParc]FASTAAdd to Basket

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    MAAGDGGARV RVDGRVLSLT NLDKVLFPAT GTTKAELIDY YRRIAPVMIP    50
    HLAGRAVTRK RWPNGVETEP FFTKNLDSGT PDWVPRRGIV HHERTSTYPL 100
    VEDTATLVWL AQMASIELHV PQWRFPPGDS PFVLDGSATR PDRFVLDLDP 150
    GPGVGLAQCA EVALAAKGYL DDVGLAAIPV TSGSKGLHLY ATIHGVSSEQ 200
    ASAFAKELAG HLAEDLPQLV VTQMKRSLRD GKVFVDYSQN NAAKTTVSPY 250
    SVRGRDQPWV AAPRTWGELG EPGLAHLELG EVLERAADGD LLAPLLPPDP 300
    LSTYRAKRDS ARTPEPVPFA APVAAPAGDP RFVIQEHHAR RLHWDLRLEH 350
    DGVLASWAVP RGVPTTTGHN RLAVHTEDHP MEYLTFHGSI PKGEYGGGEM 400
    TVWDTGTYTP EKFRDDEVIF VLHGQRVQGR FALIRTDPGR GGGKEQWLLH 450
    LMKDQSGVAT SPEKRAHAVV DAPDAAADDG AHISLSDAVE PRRIAPDLRP 500
    MLATAGQVGD GDYPAREWAF EPKWDGYRAL VRFSARGVAL QSRSGRDFTQ 550
    EFAELAVVPE ELAAHAGVLD AEIVALDAAG RPSFHALQER GTGARPAMRL 600
    LVFDVLHLDG TSLVNKRYSD RRQVLLALPL PAADPDHLGR EERDVGGWRR 650
    SVTIGTSVRA ALRASAEARL EGVIAKRLDA RYLPGRRGHA WVKLKHSLDA 700
    EVVIGGWRPG QGRRAGGIGS LLLGVPDDDG GLRYVGKVGT GFTDAALDAL 750
    LATLEPRERT TSPFTTEVPR VEAKVAHWVR PDVVGEVTFD SWTDDGVLRA 800
    ARWRGLRPDK APADLA 816
    Length:816
    Mass (Da):88,722
    Last modified:July 28, 2009 - v1
    Checksum:iE544CDD9BA9970E9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001618 Genomic DNA. Translation: ACQ78915.1.
    RefSeqiWP_012725695.1. NC_012669.1.
    YP_002880677.1. NC_012669.1.

    Genome annotation databases

    EnsemblBacteriaiACQ78915; ACQ78915; Bcav_0653.
    GeneIDi7858454.
    KEGGibcv:Bcav_0653.
    PATRICi21091867. VBIBeuCav91323_0665.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001618 Genomic DNA. Translation: ACQ78915.1 .
    RefSeqi WP_012725695.1. NC_012669.1.
    YP_002880677.1. NC_012669.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 471853.Bcav_0653.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACQ78915 ; ACQ78915 ; Bcav_0653 .
    GeneIDi 7858454.
    KEGGi bcv:Bcav_0653.
    PATRICi 21091867. VBIBeuCav91323_0665.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BCAV471853:GI1Z-662-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-8 / DSM 12333 / NBRC 16432Imported.

    Entry informationi

    Entry nameiC5BY21_BEUC1
    AccessioniPrimary (citable) accession number: C5BY21
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3