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C5BNY8

- GCSP_TERTT

UniProt

C5BNY8 - GCSP_TERTT

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Protein

Glycine dehydrogenase (decarboxylating)

Gene
gcvP, TERTU_0724
Organism
Teredinibacter turnerae (strain ATCC 39867 / T7901)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO2 is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein By similarity.UniRule annotation

Catalytic activityi

Glycine + [glycine-cleavage complex H protein]-N(6)-lipoyl-L-lysine = [glycine-cleavage complex H protein]-S-aminomethyl-N(6)-dihydrolipoyl-L-lysine + CO2.UniRule annotation

Cofactori

Pyridoxal phosphate By similarity.UniRule annotation

GO - Molecular functioni

  1. glycine dehydrogenase (decarboxylating) activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glycine decarboxylation via glycine cleavage system Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciTTUR377629:GHSU-651-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine dehydrogenase (decarboxylating) (EC:1.4.4.2)
Alternative name(s):
Glycine cleavage system P-protein
Glycine decarboxylase
Glycine dehydrogenase (aminomethyl-transferring)
Gene namesi
Name:gcvP
Ordered Locus Names:TERTU_0724
OrganismiTeredinibacter turnerae (strain ATCC 39867 / T7901)
Taxonomic identifieri377629 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadales genera incertae sedisTeredinibacter
ProteomesiUP000009080: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 961961Glycine dehydrogenase (decarboxylating)UniRule annotationPRO_1000212657Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei709 – 7091N6-(pyridoxal phosphate)lysine By similarity

Interactioni

Subunit structurei

The glycine cleavage system is composed of four proteins: P, T, L and H By similarity.

Protein-protein interaction databases

STRINGi377629.TERTU_0724.

Structurei

3D structure databases

ProteinModelPortaliC5BNY8.

Family & Domainsi

Sequence similaritiesi

Belongs to the GcvP family.

Phylogenomic databases

eggNOGiCOG1003.
HOGENOMiHOG000239369.
KOiK00281.
OMAiTAYLTHP.
OrthoDBiEOG6HMXDX.

Family and domain databases

Gene3Di3.40.640.10. 2 hits.
HAMAPiMF_00711. GcvP.
InterProiIPR020580. GDC-P_N.
IPR020581. GDC_P.
IPR003437. GDC_P_homo.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11773. PTHR11773. 1 hit.
PfamiPF02347. GDC-P. 2 hits.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 3 hits.
TIGRFAMsiTIGR00461. gcvP. 1 hit.

Sequencei

Sequence statusi: Complete.

C5BNY8-1 [UniParc]FASTAAdd to Basket

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MPNTDSLNNL FASDEFISRH IGPDQNQVEK MLATLEVDSL DALIEKTVPA    50
TIREAQPLPL AEPVAEHTAL EELKSLAAKN DVFTSYIGLG YHPTRVPNVI 100
LRNVLENPGW YTAYTPYQPE IAQGRLEGLL NFQQMITDLT GMEMANASML 150
DEATAAAEAM AMAKRVGRKN SSNCFFIDKN CYPQTIAVMR TRAEHFGFDI 200
IVDAPEKALA GEDYFGAILQ YPGADGGIGD IESWIKTIQS KDALAIVAAD 250
IMSLVLLRSP GDMGADIVIG CNQRFGIPMG FGGPHAAFFA FKEKHKRSTP 300
GRIIGVSVDS RGKQALRMAM QTREQHIRRE KANSNICTSQ VLLAVMSAFY 350
AMYHGAEGVD RIARRIHILT KMLSEGLISL GYKLRHTTFF DTLCIEVGDQ 400
QKPLLDRAQH ARINLCAMGS GALSISLSEC TTLDDLTALI AVFAGGESPL 450
DMPSLEAKAQ QKAVLSENLL RDGRALQHEI FSQYHSETEM LRYLKRLESR 500
DIALNHAMIP LGSCTMKLNA TAEMIPVTWP EFGNMHPFAP ISQAAGYAEM 550
FNQLQHMLAA CTGYDAISLQ PNAGSQGEYA GLLTIKKYFE AKGEVRSICL 600
IPQSAHGTNP ASAQMASMKV VVVNCDDDGN VDIADLDAKI AQHGENIAAI 650
MVTYPSTHGV FEENITQICD KIHAVGAQVY IDGANMNALV GIASPGHFGG 700
DVSHLNLHKT FCIPHGGGGP GMGPIGVKDH LAPYLAAHPL QEIPGTVAAN 750
GTVSAAPWGS ASILPISWMY IRMMGAKGMK MASEYAILNA NYIAKRLKNH 800
FPILYSGKHG FVAHECLLDL RPLKEASGVS EEDIAKRLMD FGFHAPTMSF 850
PVAGTLMIEP TESENQFELD RFCDAMIQIR EEIRKIEQGE LPADDNPLVN 900
APHTLDDVCN SEWNRSYTRD QACRPLDYLK HHKVWPTVNR IDNVYGDRNL 950
ICSCPGVDDY R 961
Length:961
Mass (Da):105,239
Last modified:July 28, 2009 - v1
Checksum:i4F241C8877C56485
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001614 Genomic DNA. Translation: ACR13967.1.
RefSeqiWP_015820082.1. NC_012997.1.
YP_003072346.1. NC_012997.1.

Genome annotation databases

EnsemblBacteriaiACR13967; ACR13967; TERTU_0724.
GeneIDi8210889.
KEGGittu:TERTU_0724.
PATRICi23868641. VBITerTur118718_0678.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001614 Genomic DNA. Translation: ACR13967.1 .
RefSeqi WP_015820082.1. NC_012997.1.
YP_003072346.1. NC_012997.1.

3D structure databases

ProteinModelPortali C5BNY8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 377629.TERTU_0724.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACR13967 ; ACR13967 ; TERTU_0724 .
GeneIDi 8210889.
KEGGi ttu:TERTU_0724.
PATRICi 23868641. VBITerTur118718_0678.

Phylogenomic databases

eggNOGi COG1003.
HOGENOMi HOG000239369.
KOi K00281.
OMAi TAYLTHP.
OrthoDBi EOG6HMXDX.

Enzyme and pathway databases

BioCyci TTUR377629:GHSU-651-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 2 hits.
HAMAPi MF_00711. GcvP.
InterProi IPR020580. GDC-P_N.
IPR020581. GDC_P.
IPR003437. GDC_P_homo.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
PANTHERi PTHR11773. PTHR11773. 1 hit.
Pfami PF02347. GDC-P. 2 hits.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 3 hits.
TIGRFAMsi TIGR00461. gcvP. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39867 / T7901.

Entry informationi

Entry nameiGCSP_TERTT
AccessioniPrimary (citable) accession number: C5BNY8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: July 28, 2009
Last modified: September 3, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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