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C5BHJ4

- DEOB_EDWI9

UniProt

C5BHJ4 - DEOB_EDWI9

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Protein

Phosphopentomutase

Gene
deoB, NT01EI_0564
Organism
Edwardsiella ictaluri (strain 93-146)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity.UniRule annotation

Catalytic activityi

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

Cofactori

Binds 1 or 2 manganese ions Reviewed prediction.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi10 – 101Manganese By similarity
Metal bindingi311 – 3111Manganese By similarity
Metal bindingi347 – 3471Manganese By similarity
Metal bindingi348 – 3481Manganese By similarity
Metal bindingi359 – 3591Manganese By similarity

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. manganese ion binding Source: UniProtKB-HAMAP
  3. phosphopentomutase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
  2. cellular metabolic compound salvage Source: InterPro
  3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciEICT634503:GCMY-560-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphopentomutase (EC:5.4.2.7)
Alternative name(s):
Phosphodeoxyribomutase
Gene namesi
Name:deoB
Ordered Locus Names:NT01EI_0564
OrganismiEdwardsiella ictaluri (strain 93-146)
Taxonomic identifieri634503 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEdwardsiella
ProteomesiUP000001485: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 407407PhosphopentomutaseUniRule annotationPRO_1000212808Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi634503.NT01EI_0564.

Structurei

3D structure databases

ProteinModelPortaliC5BHJ4.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1015.
HOGENOMiHOG000008159.
KOiK01839.
OMAiEHTREHI.
OrthoDBiEOG6R5C7J.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

C5BHJ4-1 [UniParc]FASTAAdd to Basket

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MKRAFIMVLD SFGIGEAKDA KSFGDEGADT LGHIARACAR GEADIGRQGP    50
LHLPNLSRLG LGKAALESTG RFPEGLDENA EVIGAYGYAN ELSSGKDTPS 100
GHWEIAGVPV LFDWGYFHEH QNSFPQALLD TLVERANLPG YLGNCHSSGT 150
VILDQLGEEH MKSGKPIFYT SADSVFQIAC HEETFGLERL YELCEIARDE 200
LNKGGYNIGR VIARPFVGDK AGHFQRTGNR HDLAVEPPAP TMLKKLVDEK 250
QGDVVSIGKI ADIYANVGIT KKVKATGIDA LFDATLQEMR QAGNDTIVFT 300
NFVDFDSSYG HRRDVAGYAA ALELFDRRLP EMLALVKEDD ILILTADHGC 350
DPTWHGSDHT REHIPVLVYG PKVKPGSLGE RDTFADIGQT VARYFGLSPM 400
AYGKPMF 407
Length:407
Mass (Da):44,457
Last modified:July 28, 2009 - v1
Checksum:iFE00BE509820B384
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001600 Genomic DNA. Translation: ACR67793.1.
RefSeqiYP_002932028.1. NC_012779.2.

Genome annotation databases

EnsemblBacteriaiACR67793; ACR67793; NT01EI_0564.
GeneIDi7960332.
KEGGieic:NT01EI_0564.
PATRICi21834368. VBIEdwIct114273_0509.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001600 Genomic DNA. Translation: ACR67793.1 .
RefSeqi YP_002932028.1. NC_012779.2.

3D structure databases

ProteinModelPortali C5BHJ4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 634503.NT01EI_0564.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACR67793 ; ACR67793 ; NT01EI_0564 .
GeneIDi 7960332.
KEGGi eic:NT01EI_0564.
PATRICi 21834368. VBIEdwIct114273_0509.

Phylogenomic databases

eggNOGi COG1015.
HOGENOMi HOG000008159.
KOi K01839.
OMAi EHTREHI.
OrthoDBi EOG6R5C7J.

Enzyme and pathway databases

UniPathwayi UPA00087 ; UER00173 .
BioCyci EICT634503:GCMY-560-MONOMER.

Family and domain databases

Gene3Di 3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPi MF_00740. Phosphopentomut.
InterProi IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view ]
Pfami PF01676. Metalloenzyme. 1 hit.
[Graphical view ]
PIRSFi PIRSF001491. Ppentomutase. 1 hit.
SUPFAMi SSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsi TIGR01696. deoB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Edwardsiella ictaluri 93-146."
    Williams M.L., Gillaspy A.F., Dyer D.W., Thune R.L., Waldbieser G.C., Schuster S.C., Gipson J., Zaitshik J., Landry C., Lawrence M.L.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 93-146.

Entry informationi

Entry nameiDEOB_EDWI9
AccessioniPrimary (citable) accession number: C5BHJ4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: July 28, 2009
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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