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C5BHJ4

- DEOB_EDWI9

UniProt

C5BHJ4 - DEOB_EDWI9

Protein

Phosphopentomutase

Gene

deoB

Organism
Edwardsiella ictaluri (strain 93-146)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotation

    Catalytic activityi

    Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
    2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

    Cofactori

    Binds 1 or 2 manganese ions.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi10 – 101ManganeseUniRule annotation
    Metal bindingi311 – 3111ManganeseUniRule annotation
    Metal bindingi347 – 3471ManganeseUniRule annotation
    Metal bindingi348 – 3481ManganeseUniRule annotation
    Metal bindingi359 – 3591ManganeseUniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. manganese ion binding Source: UniProtKB-HAMAP
    3. phosphopentomutase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
    2. cellular metabolic compound salvage Source: InterPro
    3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Isomerase

    Keywords - Ligandi

    Manganese, Metal-binding

    Enzyme and pathway databases

    BioCyciEICT634503:GCMY-560-MONOMER.
    UniPathwayiUPA00087; UER00173.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
    Alternative name(s):
    PhosphodeoxyribomutaseUniRule annotation
    Gene namesi
    Name:deoBUniRule annotation
    Ordered Locus Names:NT01EI_0564
    OrganismiEdwardsiella ictaluri (strain 93-146)
    Taxonomic identifieri634503 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEdwardsiella
    ProteomesiUP000001485: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 407407PhosphopentomutasePRO_1000212808Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi634503.NT01EI_0564.

    Structurei

    3D structure databases

    ProteinModelPortaliC5BHJ4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the phosphopentomutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1015.
    HOGENOMiHOG000008159.
    KOiK01839.
    OMAiEHTREHI.
    OrthoDBiEOG6R5C7J.

    Family and domain databases

    Gene3Di3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPiMF_00740. Phosphopentomut.
    InterProiIPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view]
    PfamiPF01676. Metalloenzyme. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001491. Ppentomutase. 1 hit.
    SUPFAMiSSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsiTIGR01696. deoB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C5BHJ4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKRAFIMVLD SFGIGEAKDA KSFGDEGADT LGHIARACAR GEADIGRQGP    50
    LHLPNLSRLG LGKAALESTG RFPEGLDENA EVIGAYGYAN ELSSGKDTPS 100
    GHWEIAGVPV LFDWGYFHEH QNSFPQALLD TLVERANLPG YLGNCHSSGT 150
    VILDQLGEEH MKSGKPIFYT SADSVFQIAC HEETFGLERL YELCEIARDE 200
    LNKGGYNIGR VIARPFVGDK AGHFQRTGNR HDLAVEPPAP TMLKKLVDEK 250
    QGDVVSIGKI ADIYANVGIT KKVKATGIDA LFDATLQEMR QAGNDTIVFT 300
    NFVDFDSSYG HRRDVAGYAA ALELFDRRLP EMLALVKEDD ILILTADHGC 350
    DPTWHGSDHT REHIPVLVYG PKVKPGSLGE RDTFADIGQT VARYFGLSPM 400
    AYGKPMF 407
    Length:407
    Mass (Da):44,457
    Last modified:July 28, 2009 - v1
    Checksum:iFE00BE509820B384
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001600 Genomic DNA. Translation: ACR67793.1.
    RefSeqiYP_002932028.1. NC_012779.2.

    Genome annotation databases

    EnsemblBacteriaiACR67793; ACR67793; NT01EI_0564.
    GeneIDi7960332.
    KEGGieic:NT01EI_0564.
    PATRICi21834368. VBIEdwIct114273_0509.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001600 Genomic DNA. Translation: ACR67793.1 .
    RefSeqi YP_002932028.1. NC_012779.2.

    3D structure databases

    ProteinModelPortali C5BHJ4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 634503.NT01EI_0564.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACR67793 ; ACR67793 ; NT01EI_0564 .
    GeneIDi 7960332.
    KEGGi eic:NT01EI_0564.
    PATRICi 21834368. VBIEdwIct114273_0509.

    Phylogenomic databases

    eggNOGi COG1015.
    HOGENOMi HOG000008159.
    KOi K01839.
    OMAi EHTREHI.
    OrthoDBi EOG6R5C7J.

    Enzyme and pathway databases

    UniPathwayi UPA00087 ; UER00173 .
    BioCyci EICT634503:GCMY-560-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPi MF_00740. Phosphopentomut.
    InterProi IPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view ]
    Pfami PF01676. Metalloenzyme. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001491. Ppentomutase. 1 hit.
    SUPFAMi SSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsi TIGR01696. deoB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Edwardsiella ictaluri 93-146."
      Williams M.L., Gillaspy A.F., Dyer D.W., Thune R.L., Waldbieser G.C., Schuster S.C., Gipson J., Zaitshik J., Landry C., Lawrence M.L.
      Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 93-146.

    Entry informationi

    Entry nameiDEOB_EDWI9
    AccessioniPrimary (citable) accession number: C5BHJ4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 22, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3