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C5BHJ4 (DEOB_EDWI9) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Phosphopentomutase

EC=5.4.2.7
Alternative name(s):
Phosphodeoxyribomutase
Gene names
Name:deoB
Ordered Locus Names:NT01EI_0564
OrganismEdwardsiella ictaluri (strain 93-146) [Complete proteome] [HAMAP]
Taxonomic identifier634503 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEdwardsiella

Protein attributes

Sequence length407 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740

Catalytic activity

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740

Cofactor

Binds 1 or 2 manganese ions Potential.

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740.

Sequence similarities

Belongs to the phosphopentomutase family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 407407Phosphopentomutase HAMAP-Rule MF_00740
PRO_1000212808

Sites

Metal binding101Manganese By similarity
Metal binding3111Manganese By similarity
Metal binding3471Manganese By similarity
Metal binding3481Manganese By similarity
Metal binding3591Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
C5BHJ4 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: FE00BE509820B384

FASTA40744,457
        10         20         30         40         50         60 
MKRAFIMVLD SFGIGEAKDA KSFGDEGADT LGHIARACAR GEADIGRQGP LHLPNLSRLG 

        70         80         90        100        110        120 
LGKAALESTG RFPEGLDENA EVIGAYGYAN ELSSGKDTPS GHWEIAGVPV LFDWGYFHEH 

       130        140        150        160        170        180 
QNSFPQALLD TLVERANLPG YLGNCHSSGT VILDQLGEEH MKSGKPIFYT SADSVFQIAC 

       190        200        210        220        230        240 
HEETFGLERL YELCEIARDE LNKGGYNIGR VIARPFVGDK AGHFQRTGNR HDLAVEPPAP 

       250        260        270        280        290        300 
TMLKKLVDEK QGDVVSIGKI ADIYANVGIT KKVKATGIDA LFDATLQEMR QAGNDTIVFT 

       310        320        330        340        350        360 
NFVDFDSSYG HRRDVAGYAA ALELFDRRLP EMLALVKEDD ILILTADHGC DPTWHGSDHT 

       370        380        390        400 
REHIPVLVYG PKVKPGSLGE RDTFADIGQT VARYFGLSPM AYGKPMF 

« Hide

References

[1]"Complete genome sequence of Edwardsiella ictaluri 93-146."
Williams M.L., Gillaspy A.F., Dyer D.W., Thune R.L., Waldbieser G.C., Schuster S.C., Gipson J., Zaitshik J., Landry C., Lawrence M.L.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 93-146.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001600 Genomic DNA. Translation: ACR67793.1.
RefSeqYP_002932028.1. NC_012779.2.

3D structure databases

ProteinModelPortalC5BHJ4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING634503.NT01EI_0564.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACR67793; ACR67793; NT01EI_0564.
GeneID7960332.
KEGGeic:NT01EI_0564.
PATRIC21834368. VBIEdwIct114273_0509.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1015.
HOGENOMHOG000008159.
KOK01839.
OMAEHTREHI.
OrthoDBEOG6R5C7J.

Enzyme and pathway databases

BioCycEICT634503:GCMY-560-MONOMER.
UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOB_EDWI9
AccessionPrimary (citable) accession number: C5BHJ4
Entry history
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: July 28, 2009
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways