Skip Header

Contribute Send feedback
Read comments (?) or add your own

C5BCG0 (C5BCG0_EDWI9) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Protein-export membrane protein SecF HAMAP-Rule MF_01464
Gene names
Name:secF HAMAP-Rule MF_01464
Ordered Locus Names:NT01EI_1042 EMBL ACR68254.1
OrganismEdwardsiella ictaluri (strain 93-146) [Complete proteome] [HAMAP] EMBL ACR68254.1
Taxonomic identifier634503 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Edwardsiella ›

Protein attributes

Sequence length322 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA By similarity. HAMAP-Rule MF_01464

Subunit structure

Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC By similarity. HAMAP-Rule MF_01464

Subcellular location

Cell inner membrane; Multi-pass membrane protein By similarity HAMAP-Rule MF_01464.

Sequence similarities

Belongs to the SecD/SecF family. SecF subfamily. HAMAP-Rule MF_01464

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Transmembrane23 – 4321Helical; By similarity HAMAP-Rule MF_01464
Transmembrane142 – 16221Helical; By similarity HAMAP-Rule MF_01464
Transmembrane170 – 19021Helical; By similarity HAMAP-Rule MF_01464
Transmembrane196 – 21621Helical; By similarity HAMAP-Rule MF_01464
Transmembrane248 – 26821Helical; By similarity HAMAP-Rule MF_01464
Transmembrane276 – 29621Helical; By similarity HAMAP-Rule MF_01464

Sequences

Sequence LengthMass (Da)Tools
C5BCG0 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: 7719A4E83D271AE5

FASTA32235,051
        10         20         30         40         50         60 
MAQEYTVEQL NHGRKVIDFM RWDYVAFTLS GLLLLASCLV MYVKGFNWGL DFTGGTVIEL 

        70         80         90        100        110        120 
TVEKAPDLNA MRASLVKSGF DEPVVQNFGS SRDIMIRMAP ISGNEGQELG NRIVAVVEQV 

       130        140        150        160        170        180 
IDGNASVKRI EFVGPSVGSD LAQAGGMALL VALISILIYV GFRFEWRLAL GAVLALAHDV 

       190        200        210        220        230        240 
VITLGVLSLF HIEIDLTIVA SLMSVIGYSL NDSIVVSDRI RENFRKIRRG TPYEIVNVSL 

       250        260        270        280        290        300 
TQTLSRTIMT SATTLVVVLC LYIFGGAMLK GFSLTMLIGV SIGTVSSIYV ASALALKLGM 

       310        320 
KREHMLQQKV EKEGADQPSL LP

« Hide

References

[1]"Complete genome sequence of Edwardsiella ictaluri 93-146."
Williams M.L., Gillaspy A.F., Dyer D.W., Thune R.L., Waldbieser G.C., Schuster S.C., Gipson J., Zaitshik J., Landry C., Lawrence M.L.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 93-146.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001600 Genomic DNA. Translation: ACR68254.1.
RefSeqYP_002932489.1. NC_012779.2.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING634503.NT01EI_1042.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACR68254; ACR68254; NT01EI_1042.
GeneID7959425.
KEGGeic:NT01EI_1042.
PATRIC21835256. VBIEdwIct114273_0944.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0341.
HOGENOMHOG000245914.
KOK03074.
OMAVIEISLE.
ProtClustDBPRK13022.

Family and domain databases

HAMAPMF_01464_B. SecF_B.
InterProIPR022813. SecD/SecF.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
IPR005665. SecF_bac.
[Graphical view]
PfamPF07549. Sec_GG. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view]
PRINTSPR01755. SECFTRNLCASE.
TIGRFAMsTIGR00916. 2A0604s01. 1 hit.
TIGR00966. 3a0501s07. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC5BCG0_EDWI9
AccessionPrimary (citable) accession number: C5BCG0
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info