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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family, putative

Gene

NT01EI_0943

Organism
Edwardsiella ictaluri (strain 93-146)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciEICT634503:GCMY-933-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC family, putativeImported
Gene namesi
Ordered Locus Names:NT01EI_0943Imported
OrganismiEdwardsiella ictaluri (strain 93-146)Imported
Taxonomic identifieri634503 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEdwardsiella
Proteomesi
  • UP000001485 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi634503.NT01EI_0943.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini177 – 27094Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000245123.
KOiK03219.
OMAiNAVIVHD.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

C5B9Q4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRIIVLLILL CCEFSAVSLA QPIPWRGAPF FVSSQSVTLA SVLRDLGANS
60 70 80 90 100
GVPVVVSPHI TESYVGELRD SPPGTILAEL SRLYQLLPYY DGNTLYVYKA
110 120 130 140 150
QEVEQTTLAP SYLAGSVLKR LLQRSGLLDG YACQVRQVAA ANALQVNGVP
160 170 180 190 200
ACLSQVTTLA KQLDEQDLNQ EQNRETVEVF PLKYANASDT SYTYRNQSVV
210 220 230 240 250
VPGLVSVLRE MAQGHAMPLP DSKSSTPPSN SSGLPTFSAD LRQNAVLIRD
260 270 280 290 300
RKQNMALYRQ LIQRLDKRPT LIEISVTIID VDAGDINQLG IDWSASARIG
310 320 330 340 350
GGQVSFNNGG RLNSDSFSSL ISNSGSFMVR LSALEQQSKA KIVSRPSVVT
360 370 380 390 400
LDNVQAVLDR SITFYTKLSS EKNPKLEAIT SGALMRVTPR LIRENGGNKV
410 420 430 440 450
LLILNIEDGR QGAPLSQTES LPQVQNAEIA TQATLNLGQA LLLGGFVQNE
460 470 480 490
NTQGVRKIPL LGDLPLIGGL FRSTDRNTLS VVRLFLIKAE PRQM
Length:494
Mass (Da):53,720
Last modified:July 28, 2009 - v1
Checksum:i2F417EFE2AE1A3C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001600 Genomic DNA. Translation: ACR68156.1.
RefSeqiWP_015870340.1. NC_012779.2.

Genome annotation databases

EnsemblBacteriaiACR68156; ACR68156; NT01EI_0943.
GeneIDi7962347.
KEGGieic:NT01EI_0943.
PATRICi21835074. VBIEdwIct114273_0853.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001600 Genomic DNA. Translation: ACR68156.1.
RefSeqiWP_015870340.1. NC_012779.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi634503.NT01EI_0943.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACR68156; ACR68156; NT01EI_0943.
GeneIDi7962347.
KEGGieic:NT01EI_0943.
PATRICi21835074. VBIEdwIct114273_0853.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000245123.
KOiK03219.
OMAiNAVIVHD.

Enzyme and pathway databases

BioCyciEICT634503:GCMY-933-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Edwardsiella ictaluri 93-146."
    Williams M.L., Gillaspy A.F., Dyer D.W., Thune R.L., Waldbieser G.C., Schuster S.C., Gipson J., Zaitshik J., Landry C., Lawrence M.L.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 93-146Imported.

Entry informationi

Entry nameiC5B9Q4_EDWI9
AccessioniPrimary (citable) accession number: C5B9Q4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: March 16, 2016
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.