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Protein

50S ribosomal protein L19

Gene

rplS

Organism
Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Enzyme and pathway databases

BioCyciMEXT272630:GBY6-4914-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L19UniRule annotation
Gene namesi
Name:rplSUniRule annotationImported
Ordered Locus Names:MexAM1_META1p5186Imported
OrganismiMethylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1)Imported
Taxonomic identifieri272630 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesMethylobacteriaceaeMethylobacterium
ProteomesiUP000009081: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi272630.MexAM1_META1p5186.

Structurei

3D structure databases

ProteinModelPortaliC5AV03.
SMRiC5AV03. Positions 17-119.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L19P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0335.
HOGENOMiHOG000016264.
KOiK02884.
OMAiMLNEEQM.
OrthoDBiEOG6DZF5W.

Family and domain databases

HAMAPiMF_00402. Ribosomal_L19.
InterProiIPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR15680. PTHR15680. 1 hit.
PfamiPF01245. Ribosomal_L19. 1 hit.
[Graphical view]
PIRSFiPIRSF002191. Ribosomal_L19. 1 hit.
PRINTSiPR00061. RIBOSOMALL19.
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01024. rplS_bact. 1 hit.
PROSITEiPS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5AV03-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNIIEQLERE EVARLAKTIP DFEPGDTVIV NVRVKEGERT RVQAYEGVCI
60 70 80 90 100
ARNGGGLNES FTVRKISYGE GVERVFPVHS PMIDSIKVVR RGKVRRAKLY
110 120 130
YLRDRRGKSA RIVERSDRSD KAKAQKAAAA TAAE
Length:134
Mass (Da):15,058
Last modified:July 28, 2009 - v1
Checksum:iA66F894AD0A0D20A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001510 Genomic DNA. Translation: ACS42789.1.
RefSeqiYP_002966066.1. NC_012808.1.

Genome annotation databases

EnsemblBacteriaiACS42789; ACS42789; MexAM1_META1p5186.
GeneIDi7994955.
KEGGimea:Mex_1p5186.
PATRICi22516019. VBIMetExt101010_5055.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001510 Genomic DNA. Translation: ACS42789.1.
RefSeqiYP_002966066.1. NC_012808.1.

3D structure databases

ProteinModelPortaliC5AV03.
SMRiC5AV03. Positions 17-119.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272630.MexAM1_META1p5186.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS42789; ACS42789; MexAM1_META1p5186.
GeneIDi7994955.
KEGGimea:Mex_1p5186.
PATRICi22516019. VBIMetExt101010_5055.

Phylogenomic databases

eggNOGiCOG0335.
HOGENOMiHOG000016264.
KOiK02884.
OMAiMLNEEQM.
OrthoDBiEOG6DZF5W.

Enzyme and pathway databases

BioCyciMEXT272630:GBY6-4914-MONOMER.

Family and domain databases

HAMAPiMF_00402. Ribosomal_L19.
InterProiIPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR15680. PTHR15680. 1 hit.
PfamiPF01245. Ribosomal_L19. 1 hit.
[Graphical view]
PIRSFiPIRSF002191. Ribosomal_L19. 1 hit.
PRINTSiPR00061. RIBOSOMALL19.
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01024. rplS_bact. 1 hit.
PROSITEiPS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14718 / DSM 1338 / AM1Imported.

Entry informationi

Entry nameiC5AV03_METEA
AccessioniPrimary (citable) accession number: C5AV03
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: January 7, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.