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Protein
Submitted name:

ATP dependent DNA ligase

Gene

bglu_2g07300

Organism
Burkholderia glumae (strain BGR1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBGLU626418:GJI5-4229-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:bglu_2g07300Imported
OrganismiBurkholderia glumae (strain BGR1)Imported
Taxonomic identifieri626418 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000002187 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi626418.bglu_2g07300.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5AMU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFATLYAA LDATTSTNVK LEALIAYFAS AAPEDAAWAS YFLAGGKPRQ
60 70 80 90 100
TVPTRVLAEA ARERAGLPAW LFEESYQAVG DLAETIAHVL PPPARESALG
110 120 130 140 150
LAQWIEQRVL GLRGLDAAAL RERLAGYWDE LDWSERFLLT KLIGGGFRVG
160 170 180 190 200
VSRQLVVRAL AQVAGVDHKR IAQRMVGWTD SRQTPSAARY LRLIAPAGDG
210 220 230 240 250
DDPARPHESD LGLPYPFFLA HPLQADPATL GPVEDWIVEW KWDGIRAQLV
260 270 280 290 300
KRAGRVWLWS RGEDLVTERF PELAALGEAL PDGTVIDGEI LAWEPGAAAP
310 320 330 340 350
LPFARLQPRI TRKSLTRKVL ADSPAALLAY DLLEAEGRDL RAVPLATRRT
360 370 380 390 400
RLEALAAALS RTLAVDLLRV SPRVTADGWP ALAARRAESR ARGVEGLMLK
410 420 430 440 450
AAASEYGVGR TKASGVWWKW KIEPYAIDAV LLYAQRGHGR RASLYTDFTF
460 470 480 490 500
AVWDEAGGVR TLVPFAKAYS GLTDEEMRQV DAVVRKTTIE KFGPVRSVTP
510 520 530 540 550
TLVFEIGFEG IQASPRHKSG IAVRFPRMLR WRTDKSIDEA DTLEMLKGFL

NGAPA
Length:555
Mass (Da):61,024
Last modified:July 28, 2009 - v1
Checksum:iE5E5BC7A368B051F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001504 Genomic DNA. Translation: ACR31149.1.
RefSeqiYP_002908384.1. NC_012721.2.

Genome annotation databases

EnsemblBacteriaiACR31149; ACR31149; bglu_2g07300.
KEGGibgl:bglu_2g07300.
PATRICi19103713. VBIBurGlu130723_0969.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001504 Genomic DNA. Translation: ACR31149.1.
RefSeqiYP_002908384.1. NC_012721.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi626418.bglu_2g07300.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACR31149; ACR31149; bglu_2g07300.
KEGGibgl:bglu_2g07300.
PATRICi19103713. VBIBurGlu130723_0969.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciBGLU626418:GJI5-4229-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Burkholderia glumae BGR1."
    Lim J., Lee T.-H., Nahm B.H., Choi Y.D., Kim M., Hwang I.
    J. Bacteriol. 191:3758-3759(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BGR1Imported.

Entry informationi

Entry nameiC5AMU8_BURGB
AccessioniPrimary (citable) accession number: C5AMU8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: April 29, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.