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Protein
Submitted name:

DNA primase small subunit

Gene

bglu_1g10900

Organism
Burkholderia glumae (strain BGR1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBGLU626418:GJI5-1117-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA primase small subunitImported
Gene namesi
Ordered Locus Names:bglu_1g10900Imported
OrganismiBurkholderia glumae (strain BGR1)Imported
Taxonomic identifieri626418 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000002187 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi626418.bglu_1g10900.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5ADZ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDTLSEYQR KRRFDATPEP AGAKRRGAPA RRRDGAAAPL RFVVQVHHAR
60 70 80 90 100
RLHYDFRLEL DGVLKSWAVP KGPSPDPADK RLAIQVEDHP LDYASFEGEI
110 120 130 140 150
PPGHYGAGSV RIDDAGVWRP EGGVAGARRG YRDGKLTFEL DGAKLRGRWS
160 170 180 190 200
LTRTAMPGSR GKSSWLLVRA HEDAAGSEPA DQAADQLVDQ AAARRRTRQG
210 220 230 240 250
RPAAKPAAKR PAKPAAAQPA ASASGTATAL PGARRAALPD ALAPQLATLV
260 270 280 290 300
AAPPEDEGWR YEMKFDGYRV LIRIAGRGGR RSVRVLTREG LDWSAKFGAQ
310 320 330 340 350
CAAFAALPVD DAWLDAEAVV LDARGVPDFA ALQRALSDGD DAAIVCFVFD
360 370 380 390 400
LLHLDGRALQ AVPLDARRAR LAALLAGADS GCLRFSPTLD GAPAALLEAA
410 420 430 440 450
ARAGLEGLIG KRADGAYRAG RSRQWIKLKC RQRQEFVIGG YSAPRGSRSH
460 470 480 490 500
FGALLLGVHA APPRSTRRGG QAARERALQY VGRVGTGFDA QQLAALAKRL
510 520 530 540 550
AALERERAPF AVPPPSRGDA VRWVEPRLVA ECEFAGWTRD GLLRQAAFIA
560 570 580 590 600
LREDKPTARV VRETALPTAG RTTGGSMDSN EAASAGHAAR RRRGGADEPV
610 620 630 640 650
EAGQARPAGA ASVAGVRITH PERVVDAQGG FRKIDVVRYY ESVARWLLPQ
660 670 680 690 700
LSGRPVSLVR YMKGIGGESF FQKHAGARGM GFVTRHPGLD PGHDALMTLD
710 720 730 740 750
DTAALVGAAQ FDAIEFHTWN ATVDRIERPE RLVFDLDPDP ALPWERMIEA
760 770 780 790 800
AGLVRALLEA LGLPAFCKTS GGKGLHVVVP IVRHTEWDDA KAFSQAVARH
810 820 830 840 850
LAGQLPERFT AKMGPENRRG LIFVDYLRNG RGASTVAAYS ARARPGMGVS
860 870 880 890 900
VPLAWEEVAA TTGGAQWTIA NLSARLDAQR ADPWDGYDAA RTRITAAMRK

RLGER
Length:905
Mass (Da):97,421
Last modified:July 27, 2009 - v1
Checksum:iDE8090E26A002EFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001503 Genomic DNA. Translation: ACR28259.1.
RefSeqiYP_002910963.1. NC_012724.2.

Genome annotation databases

EnsemblBacteriaiACR28259; ACR28259; bglu_1g10900.
GeneIDi7906330.
KEGGibgl:bglu_1g10900.
PATRICi19109570. VBIBurGlu130723_3867.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001503 Genomic DNA. Translation: ACR28259.1.
RefSeqiYP_002910963.1. NC_012724.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi626418.bglu_1g10900.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACR28259; ACR28259; bglu_1g10900.
GeneIDi7906330.
KEGGibgl:bglu_1g10900.
PATRICi19109570. VBIBurGlu130723_3867.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBGLU626418:GJI5-1117-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Burkholderia glumae BGR1."
    Lim J., Lee T.-H., Nahm B.H., Choi Y.D., Kim M., Hwang I.
    J. Bacteriol. 191:3758-3759(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BGR1Imported.

Entry informationi

Entry nameiC5ADZ9_BURGB
AccessioniPrimary (citable) accession number: C5ADZ9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2009
Last sequence update: July 27, 2009
Last modified: March 31, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.