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Protein
Submitted name:

Alpha-amylase (AmyA)

Gene

amyA-1

Organism
Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciTGAM593117:GHFT-226-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylase (AmyA)Imported (EC:3.2.1.1Imported)
Gene namesi
Name:amyA-1Imported
Ordered Locus Names:TGAM_0222Imported
OrganismiThermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)Imported
Taxonomic identifieri593117 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
ProteomesiUP000001488 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi593117.TGAM_0222.

Structurei

3D structure databases

ProteinModelPortaliC5A3B2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000031038.
KOiK01176.
OMAiAFYWDVP.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

C5A3B2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGVVPALSQG GMEMRRYTRV LILLMALFLL AGLYYPSASA AKYSELEQGG
60 70 80 90 100
VIMQAFYWDV PAGGIWWDTI RQKIPEWYDA GISAIWIPPA SKGMGGAYSM
110 120 130 140 150
GYDPYDYFDL GEFYQKGTVE TRFGSKEELV NMISTAHRYG IKVIADIVIN
160 170 180 190 200
HRAGGDLEWN PYVGDYTWTD FSQVASGKYK AHYMDFHPNN YSTSDEGTFG
210 220 230 240 250
GFPDIDHLVP FNKYWLWASD ESYAAYLRSI GVDAWRFDYV KGYGAWVVKD
260 270 280 290 300
WLSWWGGWAV GEYWDTDVNA LLNWAYDSGA KVFDFPLYYK MDEAFDNKNI
310 320 330 340 350
PALVYAIQNG GTVVSRDPFK AVTFVANHDT NIIWNKYPAY AFILTYEGQP
360 370 380 390 400
VIFYRDYEEW LNKDKLNNLI WIHEHLAGGS TKILYYDDDE LIFMREGYGD
410 420 430 440 450
RPGLITYINL GSGWAERWVN VGSKFAGYTI HEYTGNLGGW VDRYVYYNGW
460 470
VKLTAPPHDP ANGYYGYSVW SYAGVG
Length:476
Mass (Da):54,452
Last modified:July 28, 2009 - v1
Checksum:iA42B04BB626447C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001398 Genomic DNA. Translation: ACS32724.1.
RefSeqiWP_015857843.1. NC_012804.1.
YP_002958588.1. NC_012804.1.

Genome annotation databases

EnsemblBacteriaiACS32724; ACS32724; TGAM_0222.
GeneIDi7988797.
KEGGitga:TGAM_0222.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001398 Genomic DNA. Translation: ACS32724.1.
RefSeqiWP_015857843.1. NC_012804.1.
YP_002958588.1. NC_012804.1.

3D structure databases

ProteinModelPortaliC5A3B2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi593117.TGAM_0222.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS32724; ACS32724; TGAM_0222.
GeneIDi7988797.
KEGGitga:TGAM_0222.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000031038.
KOiK01176.
OMAiAFYWDVP.

Enzyme and pathway databases

BioCyciTGAM593117:GHFT-226-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea."
    Zivanovic Y., Armengaud J., Lagorce A., Leplat C., Guerin P., Dutertre M., Anthouard V., Forterre P., Wincker P., Confalonieri F.
    Genome Biol. 10:R70.1-R70.23(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15229 / JCM 11827 / EJ3Imported.

Entry informationi

Entry nameiC5A3B2_THEGJ
AccessioniPrimary (citable) accession number: C5A3B2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: January 7, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.