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Protein
Submitted name:

ATP-dependent DNA ligase, putative

Gene

TGAM_2005

Organism
Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTGAM593117:GHFT-2055-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase, putativeImported
Gene namesi
Ordered Locus Names:TGAM_2005Imported
OrganismiThermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)Imported
Taxonomic identifieri593117 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
ProteomesiUP000001488 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PaxDbiC5A288.

Interactioni

Protein-protein interaction databases

STRINGi593117.TGAM_2005.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1423.
HOGENOMiHOG000224394.
KOiK07468.
OMAiICPFTTK.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

C5A288-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSSIFRNLL LKLGLPEGRL EVLEGKGGLM EDEFEGIGYV RFRDSARGFR
60 70 80 90 100
RGTVVFEDGT VVAGFPHIKR VVQLENGIRR IFRRRPFYVE EKVDGYNVRV
110 120 130 140 150
VTVKGRILAL TRGGFVCPFT TERILDFINE EFFRDYPNLV LVGEMAGPES
160 170 180 190 200
PYLVEGPPYV EEDIQFFLFD IQEKGTGRSI PAEERYKLAE EYGIPQVEVF
210 220 230 240 250
GLYDRSMIEE LYDLIERLSR EGREGIVMKT PDMRKIAKYV TPYANINDIK
260 270 280 290 300
IGSRIFFDLP HGYFMQRIKR LAFYLAEKRV RGEEFDEYAR ALGKALLRPF
310 320 330 340 350
VESIHEVASG GEVEETFKVR VKNVSTAHKM VTHFERLGVK IHIEDIEDIG
360 370 380
NGYWRITFKR VYPDATREIR ELWNGLAFVD
Length:380
Mass (Da):44,055
Last modified:July 28, 2009 - v1
Checksum:iA21B90B9F45F090B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001398 Genomic DNA. Translation: ACS34507.1.
RefSeqiWP_015859610.1. NC_012804.1.
YP_002960371.1. NC_012804.1.

Genome annotation databases

EnsemblBacteriaiACS34507; ACS34507; TGAM_2005.
GeneIDi7987062.
KEGGitga:TGAM_2005.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001398 Genomic DNA. Translation: ACS34507.1.
RefSeqiWP_015859610.1. NC_012804.1.
YP_002960371.1. NC_012804.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi593117.TGAM_2005.

Proteomic databases

PaxDbiC5A288.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS34507; ACS34507; TGAM_2005.
GeneIDi7987062.
KEGGitga:TGAM_2005.

Phylogenomic databases

eggNOGiCOG1423.
HOGENOMiHOG000224394.
KOiK07468.
OMAiICPFTTK.

Enzyme and pathway databases

BioCyciTGAM593117:GHFT-2055-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea."
    Zivanovic Y., Armengaud J., Lagorce A., Leplat C., Guerin P., Dutertre M., Anthouard V., Forterre P., Wincker P., Confalonieri F.
    Genome Biol. 10:R70.1-R70.23(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15229 / JCM 11827 / EJ3Imported.

Entry informationi

Entry nameiC5A288_THEGJ
AccessioniPrimary (citable) accession number: C5A288
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: July 22, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.