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C5A288 (C5A288_THEGJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:TGAM_2005 EMBL ACS34507.1
OrganismThermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) [Complete proteome] [HAMAP] EMBL ACS34507.1
Taxonomic identifier593117 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus

Protein attributes

Sequence length380 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACS34507.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C5A288 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: A21B90B9F45F090B

FASTA38044,055
        10         20         30         40         50         60 
MVSSIFRNLL LKLGLPEGRL EVLEGKGGLM EDEFEGIGYV RFRDSARGFR RGTVVFEDGT 

        70         80         90        100        110        120 
VVAGFPHIKR VVQLENGIRR IFRRRPFYVE EKVDGYNVRV VTVKGRILAL TRGGFVCPFT 

       130        140        150        160        170        180 
TERILDFINE EFFRDYPNLV LVGEMAGPES PYLVEGPPYV EEDIQFFLFD IQEKGTGRSI 

       190        200        210        220        230        240 
PAEERYKLAE EYGIPQVEVF GLYDRSMIEE LYDLIERLSR EGREGIVMKT PDMRKIAKYV 

       250        260        270        280        290        300 
TPYANINDIK IGSRIFFDLP HGYFMQRIKR LAFYLAEKRV RGEEFDEYAR ALGKALLRPF 

       310        320        330        340        350        360 
VESIHEVASG GEVEETFKVR VKNVSTAHKM VTHFERLGVK IHIEDIEDIG NGYWRITFKR 

       370        380 
VYPDATREIR ELWNGLAFVD 

« Hide

References

[1]"Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea."
Zivanovic Y., Armengaud J., Lagorce A., Leplat C., Guerin P., Dutertre M., Anthouard V., Forterre P., Wincker P., Confalonieri F.
Genome Biol. 10:R70.1-R70.23(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15229 / JCM 11827 / EJ3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001398 Genomic DNA. Translation: ACS34507.1.
RefSeqYP_002960371.1. NC_012804.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING593117.TGAM_2005.

Proteomic databases

PaxDbC5A288.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS34507; ACS34507; TGAM_2005.
GeneID7987062.
KEGGtga:TGAM_2005.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1423.
HOGENOMHOG000224394.
KOK07468.
OMAEEKMNGY.
ProtClustDBCLSK862643.

Enzyme and pathway databases

BioCycTGAM593117:GHFT-2055-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSPR01048. Y414FAMILY.
TIGRFAMsTIGR01209. TIGR01209. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC5A288_THEGJ
AccessionPrimary (citable) accession number: C5A288
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: April 16, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)