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Protein

UPF0115 protein YfcN

Gene

yfcN

Organism
Escherichia coli (strain K12 / MC4100 / BW2952)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciECOL595496:GI18-2175-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0115 protein YfcNUniRule annotation
Gene namesi
Name:yfcNUniRule annotation
Ordered Locus Names:BWG_2105
OrganismiEscherichia coli (strain K12 / MC4100 / BW2952)
Taxonomic identifieri595496 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183UPF0115 protein YfcNPRO_1000213401Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliC4ZVM4.
SMRiC4ZVM4. Positions 93-174.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini98 – 17376SmrUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0115 family.UniRule annotation
Contains 1 Smr domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000257487.
OMAiEHVYCAS.
OrthoDBiEOG66B3ZJ.

Family and domain databases

HAMAPiMF_01042. UPF0115.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C4ZVM4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKKTTLSEE DQALFRQLMA GTRKIKQDTI VHRPQRKKIS EVPVKRLIQE
60 70 80 90 100
QADASHYFSD EFQPLLNTEG PVKYVRPDVS HFEAKKLRRG DYSPELFLDL
110 120 130 140 150
HGLTQLQAKQ ELGALIAACR REHVFCACVM HGHGKHILKQ QTPLWLAQHP
160 170 180
HVMAFHQAPK EYGGDAALLV LIEVEEWLPP ELP
Length:183
Mass (Da):21,013
Last modified:July 28, 2009 - v1
Checksum:iD1FF3D68CF8C1DF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001396 Genomic DNA. Translation: ACR62507.1.
RefSeqiWP_000730806.1. NC_012759.1.

Genome annotation databases

EnsemblBacteriaiACR62507; ACR62507; BWG_2105.
KEGGiebw:BWG_2105.
PATRICi18273570. VBIEscCol60876_2309.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001396 Genomic DNA. Translation: ACR62507.1.
RefSeqiWP_000730806.1. NC_012759.1.

3D structure databases

ProteinModelPortaliC4ZVM4.
SMRiC4ZVM4. Positions 93-174.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACR62507; ACR62507; BWG_2105.
KEGGiebw:BWG_2105.
PATRICi18273570. VBIEscCol60876_2309.

Phylogenomic databases

HOGENOMiHOG000257487.
OMAiEHVYCAS.
OrthoDBiEOG66B3ZJ.

Enzyme and pathway databases

BioCyciECOL595496:GI18-2175-MONOMER.

Family and domain databases

HAMAPiMF_01042. UPF0115.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12."
    Ferenci T., Zhou Z., Betteridge T., Ren Y., Liu Y., Feng L., Reeves P.R., Wang L.
    J. Bacteriol. 191:4025-4029(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MC4100 / BW2952.

Entry informationi

Entry nameiYFCN_ECOBW
AccessioniPrimary (citable) accession number: C4ZVM4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: July 28, 2009
Last modified: November 11, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.