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C4ZSA5

- C4ZSA5_ECOBW

UniProt

C4ZSA5 - C4ZSA5_ECOBW

Protein
Submitted name:

Toxin of the YoeB-YefM toxin-antitoxin system

Gene

yoeB

Organism
Escherichia coli (strain K12 / MC4100 / BW2952)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. endonuclease activity Source: InterPro

    GO - Biological processi

    1. RNA catabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciECOL595496:GI18-1871-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Toxin of the YoeB-YefM toxin-antitoxin systemImported
    Gene namesi
    Name:yoeBImported
    Ordered Locus Names:BWG_1807Imported
    OrganismiEscherichia coli (strain K12 / MC4100 / BW2952)Imported
    Taxonomic identifieri595496 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000001478: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi595496.BWG_1807.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4BYBX-ray3.35Y/Z1-84[»]
    ProteinModelPortaliC4ZSA5.
    SMRiC4ZSA5. Positions 1-84.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG4115.
    HOGENOMiHOG000216470.
    OMAiSWTDEAW.
    OrthoDBiEOG6KWZ5K.

    Family and domain databases

    InterProiIPR009614. YoeB.
    [Graphical view]
    PfamiPF06769. Plasmid_Txe. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02116. toxin_Txe_YoeB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C4ZSA5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLIWSEESW DDYLYWQETD KRIVKKINEL IKDTRRTPFE GKGKPEPLKH   50
    NLSGFWSRRI TEEHRLVYAV TDDSLLIAAC RYHY 84
    Length:84
    Mass (Da):10,216
    Last modified:July 28, 2009 - v1
    Checksum:iC043381C56DC2939
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001396 Genomic DNA. Translation: ACR65670.1.
    RefSeqiYP_002927003.1. NC_012759.1.

    Genome annotation databases

    EnsemblBacteriaiACR65670; ACR65670; BWG_1807.
    GeneIDi7954860.
    KEGGiebw:BWG_1807.
    PATRICi18272919. VBIEscCol60876_1984.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001396 Genomic DNA. Translation: ACR65670.1 .
    RefSeqi YP_002927003.1. NC_012759.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4BYB X-ray 3.35 Y/Z 1-84 [» ]
    ProteinModelPortali C4ZSA5.
    SMRi C4ZSA5. Positions 1-84.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 595496.BWG_1807.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACR65670 ; ACR65670 ; BWG_1807 .
    GeneIDi 7954860.
    KEGGi ebw:BWG_1807.
    PATRICi 18272919. VBIEscCol60876_1984.

    Phylogenomic databases

    eggNOGi COG4115.
    HOGENOMi HOG000216470.
    OMAi SWTDEAW.
    OrthoDBi EOG6KWZ5K.

    Enzyme and pathway databases

    BioCyci ECOL595496:GI18-1871-MONOMER.

    Family and domain databases

    InterProi IPR009614. YoeB.
    [Graphical view ]
    Pfami PF06769. Plasmid_Txe. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02116. toxin_Txe_YoeB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12."
      Ferenci T., Zhou Z., Betteridge T., Ren Y., Liu Y., Feng L., Reeves P.R., Wang L.
      J. Bacteriol. 191:4025-4029(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MC4100 / BW2952Imported.
    2. "YoeB-ribosome structure: a canonical RNase that requires the ribosome for its specific activity."
      Feng S., Chen Y., Kamada K., Wang H., Tang K., Wang M., Gao Y.G.
      Nucleic Acids Res. 41:9549-9556(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS).

    Entry informationi

    Entry nameiC4ZSA5_ECOBW
    AccessioniPrimary (citable) accession number: C4ZSA5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteomeImported

    External Data

    Dasty 3