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Protein
Submitted name:

Toxin of the YoeB-YefM toxin-antitoxin system

Gene

yoeB

Organism
Escherichia coli (strain K12 / MC4100 / BW2952)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. endonuclease activity Source: InterPro

GO - Biological processi

  1. RNA catabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciECOL595496:GI18-1871-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Toxin of the YoeB-YefM toxin-antitoxin systemImported
Gene namesi
Name:yoeBImported
Ordered Locus Names:BWG_1807Imported
OrganismiEscherichia coli (strain K12 / MC4100 / BW2952)Imported
Taxonomic identifieri595496 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000001478 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi595496.BWG_1807.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V8XX-ray3.35AY/AZ/CY/CZ1-84[»]
ProteinModelPortaliC4ZSA5.
SMRiC4ZSA5. Positions 1-84.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG4115.
HOGENOMiHOG000216470.
OMAiGEHRLVY.
OrthoDBiEOG6KWZ5K.

Family and domain databases

InterProiIPR009614. YoeB.
[Graphical view]
PfamiPF06769. Plasmid_Txe. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02116. toxin_Txe_YoeB. 1 hit.

Sequencei

Sequence statusi: Complete.

C4ZSA5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLIWSEESW DDYLYWQETD KRIVKKINEL IKDTRRTPFE GKGKPEPLKH
60 70 80
NLSGFWSRRI TEEHRLVYAV TDDSLLIAAC RYHY
Length:84
Mass (Da):10,216
Last modified:July 28, 2009 - v1
Checksum:iC043381C56DC2939
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001396 Genomic DNA. Translation: ACR65670.1.
RefSeqiYP_002927003.1. NC_012759.1.

Genome annotation databases

EnsemblBacteriaiACR65670; ACR65670; BWG_1807.
KEGGiebw:BWG_1807.
PATRICi18272919. VBIEscCol60876_1984.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001396 Genomic DNA. Translation: ACR65670.1.
RefSeqiYP_002927003.1. NC_012759.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V8XX-ray3.35AY/AZ/CY/CZ1-84[»]
ProteinModelPortaliC4ZSA5.
SMRiC4ZSA5. Positions 1-84.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi595496.BWG_1807.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACR65670; ACR65670; BWG_1807.
KEGGiebw:BWG_1807.
PATRICi18272919. VBIEscCol60876_1984.

Phylogenomic databases

eggNOGiCOG4115.
HOGENOMiHOG000216470.
OMAiGEHRLVY.
OrthoDBiEOG6KWZ5K.

Enzyme and pathway databases

BioCyciECOL595496:GI18-1871-MONOMER.

Family and domain databases

InterProiIPR009614. YoeB.
[Graphical view]
PfamiPF06769. Plasmid_Txe. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02116. toxin_Txe_YoeB. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12."
    Ferenci T., Zhou Z., Betteridge T., Ren Y., Liu Y., Feng L., Reeves P.R., Wang L.
    J. Bacteriol. 191:4025-4029(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MC4100 / BW2952Imported.
  2. "YoeB-ribosome structure: a canonical RNase that requires the ribosome for its specific activity."
    Feng S., Chen Y., Kamada K., Wang H., Tang K., Wang M., Gao Y.G.
    Nucleic Acids Res. 41:9549-9556(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS).

Entry informationi

Entry nameiC4ZSA5_ECOBW
AccessioniPrimary (citable) accession number: C4ZSA5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: April 1, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.