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C4XSR3

- C4XSR3_DESMR

UniProt

C4XSR3 - C4XSR3_DESMR

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Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

gabT

Organism
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. 4-aminobutyrate transaminase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. gamma-aminobutyric acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciDMAG573370:GHJL-2289-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
4-aminobutyrate aminotransferaseImported
Gene namesi
Name:gabTImported
Ordered Locus Names:DMR_22640Imported
OrganismiDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)Imported
Taxonomic identifieri573370 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000009071: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi573370.DMR_22640.

Structurei

3D structure databases

ProteinModelPortaliC4XSR3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK07250.
OMAiNSFTHTA.
OrthoDBiEOG6QVRHN.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C4XSR3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNTTDKAQEL QALRDRYVPK GHPNATPFFV ESAKGALLRD VTGREFIDFV
60 70 80 90 100
GGIGVLNVGH CHPKVVAAVK DQAGRYLHTC SMVTMYEPYV QLAARLSEAA
110 120 130 140 150
PGDFEKKAMF VNSGSEAVEN AVKIARCHTG RAGVVSMKNA FHGRTLLAMS
160 170 180 190 200
LTSKVKPYKF GFGPLAPEVY QYPNYAYCYR CPLGLTYPKC GVACADKLRE
210 220 230 240 250
FFIATAAAEN IACIIAEPVQ GEGGFVVPPK EFFEKLRAIC DEYGIVFIAD
260 270 280 290 300
EIQSGFGRTS KLFAMEHFGV APDLMTVAKS MGGGLPLAGV VGKAEIMDAV
310 320 330 340 350
APGGIGGTYG GNPLACRAGL AVMDIFEQDN LLAKAERLGN VVKRRFAAFK
360 370 380 390 400
KQYQLIGDER GLGAMRALEF VSDRATKAPC PEAAKGVAKF CQDNGLLVLS
410 420 430 440
CGNFGNCIRV LMPLVITRDQ LDRGLDIMEE GIREVSKSLG K
Length:441
Mass (Da):47,550
Last modified:July 28, 2009 - v1
Checksum:i61774EB86FBFD80C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010904 Genomic DNA. Translation: BAH75755.1.
RefSeqiWP_015860937.1. NC_012796.1.
YP_002953641.1. NC_012796.1.

Genome annotation databases

EnsemblBacteriaiBAH75755; BAH75755; DMR_22640.
GeneIDi7983008.
KEGGidma:DMR_22640.
PATRICi21750819. VBIDesMag26496_2177.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010904 Genomic DNA. Translation: BAH75755.1 .
RefSeqi WP_015860937.1. NC_012796.1.
YP_002953641.1. NC_012796.1.

3D structure databases

ProteinModelPortali C4XSR3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 573370.DMR_22640.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAH75755 ; BAH75755 ; DMR_22640 .
GeneIDi 7983008.
KEGGi dma:DMR_22640.
PATRICi 21750819. VBIDesMag26496_2177.

Phylogenomic databases

eggNOGi COG0160.
HOGENOMi HOG000020206.
KOi K07250.
OMAi NSFTHTA.
OrthoDBi EOG6QVRHN.

Enzyme and pathway databases

BioCyci DMAG573370:GHJL-2289-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
PANTHERi PTHR11986. PTHR11986. 1 hit.
Pfami PF00202. Aminotran_3. 1 hit.
[Graphical view ]
PIRSFi PIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR00700. GABAtrnsam. 1 hit.
PROSITEi PS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
    Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
    Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700980 / DSM 13731 / RS-1Imported.

Entry informationi

Entry nameiC4XSR3_DESMR
AccessioniPrimary (citable) accession number: C4XSR3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3