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C4XSR3

- C4XSR3_DESMR

UniProt

C4XSR3 - C4XSR3_DESMR

Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

gabT

Organism
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. 4-aminobutyrate transaminase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. gamma-aminobutyric acid metabolic process Source: InterPro

    Keywords - Molecular functioni

    AminotransferaseImported, Transferase

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Enzyme and pathway databases

    BioCyciDMAG573370:GHJL-2289-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    4-aminobutyrate aminotransferaseImported
    Gene namesi
    Name:gabTImported
    Ordered Locus Names:DMR_22640Imported
    OrganismiDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)Imported
    Taxonomic identifieri573370 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
    ProteomesiUP000009071: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi573370.DMR_22640.

    Structurei

    3D structure databases

    ProteinModelPortaliC4XSR3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0160.
    HOGENOMiHOG000020206.
    KOiK07250.
    OMAiNSFTHTA.
    OrthoDBiEOG6QVRHN.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR004632. 4NH2But_aminotransferase_bac.
    IPR005814. Aminotrans_3.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PANTHERiPTHR11986. PTHR11986. 1 hit.
    PfamiPF00202. Aminotran_3. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
    PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C4XSR3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNTTDKAQEL QALRDRYVPK GHPNATPFFV ESAKGALLRD VTGREFIDFV    50
    GGIGVLNVGH CHPKVVAAVK DQAGRYLHTC SMVTMYEPYV QLAARLSEAA 100
    PGDFEKKAMF VNSGSEAVEN AVKIARCHTG RAGVVSMKNA FHGRTLLAMS 150
    LTSKVKPYKF GFGPLAPEVY QYPNYAYCYR CPLGLTYPKC GVACADKLRE 200
    FFIATAAAEN IACIIAEPVQ GEGGFVVPPK EFFEKLRAIC DEYGIVFIAD 250
    EIQSGFGRTS KLFAMEHFGV APDLMTVAKS MGGGLPLAGV VGKAEIMDAV 300
    APGGIGGTYG GNPLACRAGL AVMDIFEQDN LLAKAERLGN VVKRRFAAFK 350
    KQYQLIGDER GLGAMRALEF VSDRATKAPC PEAAKGVAKF CQDNGLLVLS 400
    CGNFGNCIRV LMPLVITRDQ LDRGLDIMEE GIREVSKSLG K 441
    Length:441
    Mass (Da):47,550
    Last modified:July 28, 2009 - v1
    Checksum:i61774EB86FBFD80C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010904 Genomic DNA. Translation: BAH75755.1.
    RefSeqiYP_002953641.1. NC_012796.1.

    Genome annotation databases

    EnsemblBacteriaiBAH75755; BAH75755; DMR_22640.
    GeneIDi7983008.
    KEGGidma:DMR_22640.
    PATRICi21750819. VBIDesMag26496_2177.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010904 Genomic DNA. Translation: BAH75755.1 .
    RefSeqi YP_002953641.1. NC_012796.1.

    3D structure databases

    ProteinModelPortali C4XSR3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 573370.DMR_22640.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAH75755 ; BAH75755 ; DMR_22640 .
    GeneIDi 7983008.
    KEGGi dma:DMR_22640.
    PATRICi 21750819. VBIDesMag26496_2177.

    Phylogenomic databases

    eggNOGi COG0160.
    HOGENOMi HOG000020206.
    KOi K07250.
    OMAi NSFTHTA.
    OrthoDBi EOG6QVRHN.

    Enzyme and pathway databases

    BioCyci DMAG573370:GHJL-2289-MONOMER.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR004632. 4NH2But_aminotransferase_bac.
    IPR005814. Aminotrans_3.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    PANTHERi PTHR11986. PTHR11986. 1 hit.
    Pfami PF00202. Aminotran_3. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR00700. GABAtrnsam. 1 hit.
    PROSITEi PS00600. AA_TRANSFER_CLASS_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
      Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
      Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700980 / DSM 13731 / RS-1Imported.

    Entry informationi

    Entry nameiC4XSR3_DESMR
    AccessioniPrimary (citable) accession number: C4XSR3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3