C4XSR3 (C4XSR3_DESMR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL BAH75755.1

Gene names

Name:	gabT EMBL BAH75755.1
Ordered Locus Names:	DMR_22640 EMBL BAH75755.1

Organism

Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) [Complete proteome] [HAMAP] EMBL BAH75755.1

Taxonomic identifier

573370 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio › Desulfovibrio magneticus

Protein attributes

Sequence length	441 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL BAH75755.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C4XSR3 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: 61774EB86FBFD80C	FASTA	441	47,550
	10 20 30 40 50 60 MNTTDKAQEL QALRDRYVPK GHPNATPFFV ESAKGALLRD VTGREFIDFV GGIGVLNVGH 70 80 90 100 110 120 CHPKVVAAVK DQAGRYLHTC SMVTMYEPYV QLAARLSEAA PGDFEKKAMF VNSGSEAVEN 130 140 150 160 170 180 AVKIARCHTG RAGVVSMKNA FHGRTLLAMS LTSKVKPYKF GFGPLAPEVY QYPNYAYCYR 190 200 210 220 230 240 CPLGLTYPKC GVACADKLRE FFIATAAAEN IACIIAEPVQ GEGGFVVPPK EFFEKLRAIC 250 260 270 280 290 300 DEYGIVFIAD EIQSGFGRTS KLFAMEHFGV APDLMTVAKS MGGGLPLAGV VGKAEIMDAV 310 320 330 340 350 360 APGGIGGTYG GNPLACRAGL AVMDIFEQDN LLAKAERLGN VVKRRFAAFK KQYQLIGDER 370 380 390 400 410 420 GLGAMRALEF VSDRATKAPC PEAAKGVAKF CQDNGLLVLS CGNFGNCIRV LMPLVITRDQ 430 440 LDRGLDIMEE GIREVSKSLG K

References

[1]

"Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria." Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T. Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700980 / DSM 13731 / RS-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP010904 Genomic DNA. Translation: BAH75755.1.
RefSeq	YP_002953641.1. NC_012796.1.
3D structure databases
ProteinModelPortal	C4XSR3.
ModBase	Search...
Protein-protein interaction databases
STRING	573370.DMR_22640.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAH75755; BAH75755; DMR_22640.
GeneID	7983008.
KEGG	dma:DMR_22640.
PATRIC	21750819. VBIDesMag26496_2177.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K07250.
OMA	NIACIIA.
ProtClustDB	CLSK2473843.
Enzyme and pathway databases
BioCyc	DMAG573370:GHJL-4154-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C4XSR3_DESMR

Accession

Primary (citable) accession number: C4XSR3

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)