C4XQ20 (C4XQ20_DESMR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Superoxide dismutase RuleBase RU000414
EC=1.15.1.1 RuleBase RU000414

Gene names

Name:	sodB EMBL BAH77719.1
Ordered Locus Names:	DMR_42280 EMBL BAH77719.1

Organism

Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) [Complete proteome] [HAMAP] EMBL BAH77719.1

Taxonomic identifier

573370 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio › Desulfovibrio magneticus

Protein attributes

Sequence length	233 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000414
Catalytic activity	2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000414
Sequence similarities	Belongs to the iron/manganese superoxide dismutase family. RuleBase RU004477

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU000414
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	superoxide metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	metal ion binding Inferred from electronic annotation. Source: InterPro superoxide dismutase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C4XQ20 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: 24DA0CA1377107F4	FASTA	233	25,234
	10 20 30 40 50 60 MPSPLTVSRR QALRLVAGTG LFFMAGGMLR PSSAAAAAFE APKLPYAENA LEPVISARTV 70 80 90 100 110 120 SFHYGKHTLG YFDNANKLVA DTPLAGQPLE KVFLEAAKDQ KLVGLFRNAA QAWNHVFYWN 130 140 150 160 170 180 GLSAAGGKPS AKLQKAIDTS FGGQEALNKA LAEAAVAQFG SGWAWLVADP AGKLSVVKTG 190 200 210 220 230 NADNPLQEGL KPLWVIDVWE HAYYLDYQNR RAEYVKGVLE KLVNWEFAAQ NLG

References

[1]

"Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria." Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T. Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700980 / DSM 13731 / RS-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP010904 Genomic DNA. Translation: BAH77719.1.
RefSeq	YP_002955605.1. NC_012796.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	573370.DMR_42280.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAH77719; BAH77719; DMR_42280.
GeneID	7982712.
KEGG	dma:DMR_42280.
PATRIC	21754489. VBIDesMag26496_3981.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0605.
HOGENOM	HOG000013584.
KO	K04564.
OMA	MAYQQPA.
Enzyme and pathway databases
BioCyc	DMAG573370:GHJL-4654-MONOMER.
Family and domain databases
InterPro	IPR001189. Mn/Fe_SOD. IPR019833. Mn/Fe_SOD_BS. IPR019832. Mn/Fe_SOD_C. IPR019831. Mn/Fe_SOD_N. IPR006311. TAT_signal. [Graphical view]
PANTHER	PTHR11404. PTHR11404. 1 hit.
Pfam	PF02777. Sod_Fe_C. 1 hit. PF00081. Sod_Fe_N. 1 hit. [Graphical view]
PIRSF	PIRSF000349. SODismutase. 1 hit.
PRINTS	PR01703. MNSODISMTASE.
SUPFAM	SSF46609. SODismutase. 1 hit. SSF54719. SODismutase. 1 hit.
PROSITE	PS00088. SOD_MN. 1 hit. PS51318. TAT. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C4XQ20_DESMR

Accession

Primary (citable) accession number: C4XQ20

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)