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C4XQ20

- C4XQ20_DESMR

UniProt

C4XQ20 - C4XQ20_DESMR

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Protein

Superoxide dismutase

Gene

sodB

Organism
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Enzyme and pathway databases

BioCyciDMAG573370:GHJL-4283-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:DMR_42280Imported
OrganismiDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)Imported
Taxonomic identifieri573370 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000009071: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi573370.DMR_42280.

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013584.
KOiK04564.
OMAiKIGIFNN.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
IPR006311. TAT_signal.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C4XQ20-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPSPLTVSRR QALRLVAGTG LFFMAGGMLR PSSAAAAAFE APKLPYAENA
60 70 80 90 100
LEPVISARTV SFHYGKHTLG YFDNANKLVA DTPLAGQPLE KVFLEAAKDQ
110 120 130 140 150
KLVGLFRNAA QAWNHVFYWN GLSAAGGKPS AKLQKAIDTS FGGQEALNKA
160 170 180 190 200
LAEAAVAQFG SGWAWLVADP AGKLSVVKTG NADNPLQEGL KPLWVIDVWE
210 220 230
HAYYLDYQNR RAEYVKGVLE KLVNWEFAAQ NLG
Length:233
Mass (Da):25,234
Last modified:July 28, 2009 - v1
Checksum:i24DA0CA1377107F4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010904 Genomic DNA. Translation: BAH77719.1.
RefSeqiWP_015862844.1. NC_012796.1.
YP_002955605.1. NC_012796.1.

Genome annotation databases

EnsemblBacteriaiBAH77719; BAH77719; DMR_42280.
GeneIDi7982712.
KEGGidma:DMR_42280.
PATRICi21754489. VBIDesMag26496_3981.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010904 Genomic DNA. Translation: BAH77719.1 .
RefSeqi WP_015862844.1. NC_012796.1.
YP_002955605.1. NC_012796.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 573370.DMR_42280.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAH77719 ; BAH77719 ; DMR_42280 .
GeneIDi 7982712.
KEGGi dma:DMR_42280.
PATRICi 21754489. VBIDesMag26496_3981.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013584.
KOi K04564.
OMAi KIGIFNN.
OrthoDBi EOG63NMNT.

Enzyme and pathway databases

BioCyci DMAG573370:GHJL-4283-MONOMER.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
IPR006311. TAT_signal.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
    Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
    Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700980 / DSM 13731 / RS-1Imported.

Entry informationi

Entry nameiC4XQ20_DESMR
AccessioniPrimary (citable) accession number: C4XQ20
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3