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C4XIP7

- C4XIP7_DESMR

UniProt

C4XIP7 - C4XIP7_DESMR

Protein

Elongation factor Tu

Gene

tuf

Organism
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi19 – 268GTPUniRule annotation
    Nucleotide bindingi81 – 855GTPUniRule annotation
    Nucleotide bindingi136 – 1394GTPUniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: InterPro
    2. GTP binding Source: UniProtKB-HAMAP
    3. translation elongation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Elongation factorUniRule annotationImported

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    GTP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciDMAG573370:GHJL-1229-MONOMER.
    DMAG573370:GHJL-3162-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Elongation factor TuUniRule annotation
    Short name:
    EF-TuUniRule annotation
    Gene namesi
    Name:tufUniRule annotationImported
    Ordered Locus Names:DMR_12180Imported, DMR_31240Imported
    OrganismiDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)Imported
    Taxonomic identifieri573370 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
    ProteomesiUP000009071: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi573370.DMR_31240.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily.UniRule annotation
    Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0050.
    HOGENOMiHOG000229290.
    KOiK02358.
    OMAiGTEMCMP.
    OrthoDBiEOG6R5C6X.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00118_B. EF_Tu_B.
    InterProiIPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view]
    PfamiPF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view]
    PRINTSiPR00315. ELONGATNFCT.
    SUPFAMiSSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEiPS00301. EFACTOR_GTP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C4XIP7-1 [UniParc]FASTAAdd to Basket

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    MGKAKFERNK PHVNIGTIGH IDHGKTTLTA AITRLASLKG NGEYIPFDQI    50
    DKAPEEKERG ITIATAHVEY QTDKRHYAHV DCPGHADYIK NMITGAAQMD 100
    GGILVVAATD GPMPQTREHI LLARQVGVPQ LVVFMNKVDL VDDPELLELV 150
    ELEVRELLSK YGFPGDDIPV IKGSALKALE AADVNSPEAA PIFELLDACD 200
    SFIPEPKRDI DKPFLMPIED VFSISGRGTV VTGRVERGIV TVGDEVAIIG 250
    IKDTVKTTCT GVEMFRKILD QGQAGDNVGV LLRGIKRDDV ERGQVLAKPG 300
    SITPHRKFKA EVYVLNKEEG GRHTPFFTGY RPQFYFRTTD ITGVVTLNEG 350
    VEMVMPGDNA TFNVELIAPI AMEKGLRFAI REGGRTVGAG VVSEIVE 397
    Length:397
    Mass (Da):43,324
    Last modified:July 28, 2009 - v1
    Checksum:iD07AF7ECB7D142D6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010904 Genomic DNA. Translation: BAH74709.1.
    AP010904 Genomic DNA. Translation: BAH76615.1.
    RefSeqiYP_002952595.1. NC_012796.1.
    YP_002954501.1. NC_012796.1.

    Genome annotation databases

    EnsemblBacteriaiBAH74709; BAH74709; DMR_12180.
    BAH76615; BAH76615; DMR_31240.
    GeneIDi7980800.
    7980899.
    KEGGidma:DMR_12180.
    dma:DMR_31240.
    PATRICi21748675. VBIDesMag26496_1122.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010904 Genomic DNA. Translation: BAH74709.1 .
    AP010904 Genomic DNA. Translation: BAH76615.1 .
    RefSeqi YP_002952595.1. NC_012796.1.
    YP_002954501.1. NC_012796.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 573370.DMR_31240.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAH74709 ; BAH74709 ; DMR_12180 .
    BAH76615 ; BAH76615 ; DMR_31240 .
    GeneIDi 7980800.
    7980899.
    KEGGi dma:DMR_12180.
    dma:DMR_31240.
    PATRICi 21748675. VBIDesMag26496_1122.

    Phylogenomic databases

    eggNOGi COG0050.
    HOGENOMi HOG000229290.
    KOi K02358.
    OMAi GTEMCMP.
    OrthoDBi EOG6R5C6X.

    Enzyme and pathway databases

    BioCyci DMAG573370:GHJL-1229-MONOMER.
    DMAG573370:GHJL-3162-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00118_B. EF_Tu_B.
    InterProi IPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view ]
    Pfami PF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view ]
    PRINTSi PR00315. ELONGATNFCT.
    SUPFAMi SSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEi PS00301. EFACTOR_GTP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
      Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
      Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700980 / DSM 13731 / RS-1Imported and RS-1Imported.

    Entry informationi

    Entry nameiC4XIP7_DESMR
    AccessioniPrimary (citable) accession number: C4XIP7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3