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C4XIP7 (C4XIP7_DESMR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length397 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
C4XIP7 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: D07AF7ECB7D142D6

FASTA39743,324
        10         20         30         40         50         60 
MGKAKFERNK PHVNIGTIGH IDHGKTTLTA AITRLASLKG NGEYIPFDQI DKAPEEKERG 

        70         80         90        100        110        120 
ITIATAHVEY QTDKRHYAHV DCPGHADYIK NMITGAAQMD GGILVVAATD GPMPQTREHI 

       130        140        150        160        170        180 
LLARQVGVPQ LVVFMNKVDL VDDPELLELV ELEVRELLSK YGFPGDDIPV IKGSALKALE 

       190        200        210        220        230        240 
AADVNSPEAA PIFELLDACD SFIPEPKRDI DKPFLMPIED VFSISGRGTV VTGRVERGIV 

       250        260        270        280        290        300 
TVGDEVAIIG IKDTVKTTCT GVEMFRKILD QGQAGDNVGV LLRGIKRDDV ERGQVLAKPG 

       310        320        330        340        350        360 
SITPHRKFKA EVYVLNKEEG GRHTPFFTGY RPQFYFRTTD ITGVVTLNEG VEMVMPGDNA 

       370        380        390 
TFNVELIAPI AMEKGLRFAI REGGRTVGAG VVSEIVE 

« Hide

References

[1]"Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700980 / DSM 13731 / RS-1 and RS-1 EMBL BAH76615.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP010904 Genomic DNA. Translation: BAH74709.1.
AP010904 Genomic DNA. Translation: BAH76615.1.
RefSeqYP_002952595.1. NC_012796.1.
YP_002954501.1. NC_012796.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING573370.DMR_31240.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAH74709; BAH74709; DMR_12180.
BAH76615; BAH76615; DMR_31240.
GeneID7980800.
7980899.
KEGGdma:DMR_12180.
dma:DMR_31240.
PATRIC21748675. VBIDesMag26496_1122.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0050.
HOGENOMHOG000229290.
KOK02358.
OMAGTEMCMP.
OrthoDBEOG6R5C6X.

Enzyme and pathway databases

BioCycDMAG573370:GHJL-1229-MONOMER.
DMAG573370:GHJL-3162-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC4XIP7_DESMR
AccessionPrimary (citable) accession number: C4XIP7
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: June 11, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)