Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C4XIP7

- C4XIP7_DESMR

UniProt

C4XIP7 - C4XIP7_DESMR

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Elongation factor Tu

Gene

tuf

Organism
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi19 – 268GTPUniRule annotation
Nucleotide bindingi81 – 855GTPUniRule annotation
Nucleotide bindingi136 – 1394GTPUniRule annotation

GO - Molecular functioni

  1. GTPase activity Source: InterPro
  2. GTP binding Source: UniProtKB-HAMAP
  3. translation elongation factor activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotation

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciDMAG573370:GHJL-1229-MONOMER.
DMAG573370:GHJL-3162-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Short name:
EF-TuUniRule annotation
Gene namesi
Name:tufUniRule annotationImported
Ordered Locus Names:DMR_12180Imported, DMR_31240Imported
OrganismiDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)Imported
Taxonomic identifieri573370 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000009071: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi573370.DMR_31240.

Family & Domainsi

Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0050.
HOGENOMiHOG000229290.
KOiK02358.
OMAiGTEMCMP.
OrthoDBiEOG6R5C6X.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C4XIP7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGKAKFERNK PHVNIGTIGH IDHGKTTLTA AITRLASLKG NGEYIPFDQI
60 70 80 90 100
DKAPEEKERG ITIATAHVEY QTDKRHYAHV DCPGHADYIK NMITGAAQMD
110 120 130 140 150
GGILVVAATD GPMPQTREHI LLARQVGVPQ LVVFMNKVDL VDDPELLELV
160 170 180 190 200
ELEVRELLSK YGFPGDDIPV IKGSALKALE AADVNSPEAA PIFELLDACD
210 220 230 240 250
SFIPEPKRDI DKPFLMPIED VFSISGRGTV VTGRVERGIV TVGDEVAIIG
260 270 280 290 300
IKDTVKTTCT GVEMFRKILD QGQAGDNVGV LLRGIKRDDV ERGQVLAKPG
310 320 330 340 350
SITPHRKFKA EVYVLNKEEG GRHTPFFTGY RPQFYFRTTD ITGVVTLNEG
360 370 380 390
VEMVMPGDNA TFNVELIAPI AMEKGLRFAI REGGRTVGAG VVSEIVE
Length:397
Mass (Da):43,324
Last modified:July 28, 2009 - v1
Checksum:iD07AF7ECB7D142D6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010904 Genomic DNA. Translation: BAH74709.1.
AP010904 Genomic DNA. Translation: BAH76615.1.
RefSeqiWP_015859931.1. NC_012796.1.
YP_002952595.1. NC_012796.1.
YP_002954501.1. NC_012796.1.

Genome annotation databases

EnsemblBacteriaiBAH74709; BAH74709; DMR_12180.
BAH76615; BAH76615; DMR_31240.
GeneIDi7980800.
7980899.
KEGGidma:DMR_12180.
dma:DMR_31240.
PATRICi21748675. VBIDesMag26496_1122.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010904 Genomic DNA. Translation: BAH74709.1 .
AP010904 Genomic DNA. Translation: BAH76615.1 .
RefSeqi WP_015859931.1. NC_012796.1.
YP_002952595.1. NC_012796.1.
YP_002954501.1. NC_012796.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 573370.DMR_31240.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAH74709 ; BAH74709 ; DMR_12180 .
BAH76615 ; BAH76615 ; DMR_31240 .
GeneIDi 7980800.
7980899.
KEGGi dma:DMR_12180.
dma:DMR_31240.
PATRICi 21748675. VBIDesMag26496_1122.

Phylogenomic databases

eggNOGi COG0050.
HOGENOMi HOG000229290.
KOi K02358.
OMAi GTEMCMP.
OrthoDBi EOG6R5C6X.

Enzyme and pathway databases

BioCyci DMAG573370:GHJL-1229-MONOMER.
DMAG573370:GHJL-3162-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
HAMAPi MF_00118_B. EF_Tu_B.
InterProi IPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view ]
Pfami PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view ]
PRINTSi PR00315. ELONGATNFCT.
SUPFAMi SSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEi PS00301. EFACTOR_GTP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
    Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
    Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700980 / DSM 13731 / RS-1Imported and RS-1Imported.

Entry informationi

Entry nameiC4XIP7_DESMR
AccessioniPrimary (citable) accession number: C4XIP7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3