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C4XH10

- C4XH10_DESMR

UniProt

C4XH10 - C4XH10_DESMR

Protein

Isocitrate dehydrogenase [NADP]

Gene

icd

Organism
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. isocitrate dehydrogenase (NADP+) activity Source: UniProtKB-EC
    2. magnesium ion binding Source: InterPro
    3. NAD binding Source: InterPro

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Enzyme and pathway databases

    BioCyciDMAG573370:GHJL-2851-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Isocitrate dehydrogenase [NADP]UniRule annotation (EC:1.1.1.42UniRule annotation)
    Gene namesi
    Name:icdImported
    Ordered Locus Names:DMR_28220Imported
    OrganismiDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)Imported
    Taxonomic identifieri573370 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
    ProteomesiUP000009071: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi573370.DMR_28220.

    Structurei

    3D structure databases

    ProteinModelPortaliC4XH10.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the isocitrate and isopropylmalate dehydrogenases family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0538.
    HOGENOMiHOG000021113.
    KOiK00031.
    OMAiCLRPIRY.
    OrthoDBiEOG6SNDTP.

    Family and domain databases

    Gene3Di3.40.718.10. 1 hit.
    InterProiIPR019818. IsoCit/isopropylmalate_DH_CS.
    IPR001804. Isocitrate/isopropylmalate_DH.
    IPR024084. IsoPropMal-DH-like_dom.
    [Graphical view]
    PANTHERiPTHR11835. PTHR11835. 1 hit.
    PfamiPF00180. Iso_dh. 1 hit.
    [Graphical view]
    PROSITEiPS00470. IDH_IMDH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C4XH10-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEKTVFWIEG DGIGPDVWKA GRPVLDAAVD KAYGGARKLV WKELLAGEKA    50
    FKEVGEYLPQ ATVEALTTAE LAFKGPLGTP VGGGFRSLNV TLRQVLDLYA 100
    CIRPIRYFQG IESPVKRPDL VDMIIFRENT EDVYAGIEYA TGTPEAKRLI 150
    AFLRDELGAK VDETAGIGIK PITPAGSKRL VRKAIQHAVD HKKPSVTLVH 200
    KGNIMKYTEG AFRAFGYEVA AQEFAAQCMT EQDAAAGGTK PIVVKDRIAD 250
    NMFQVALMRP QDYSVIATTN LNGDYISDAL AAQVGGLGLA PGVNMSEKLA 300
    FFEPTHGTAP GIAGKDKANP GSLILSGAML LEHLGWHEAA KLIHDSMDKT 350
    ISEKKVTVDL ADQIPGATTI GCAAFGELLA KNL 383
    Length:383
    Mass (Da):41,109
    Last modified:July 28, 2009 - v1
    Checksum:iF21089CA0C891D98
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010904 Genomic DNA. Translation: BAH76313.1.
    RefSeqiWP_015861478.1. NC_012796.1.
    YP_002954199.1. NC_012796.1.

    Genome annotation databases

    EnsemblBacteriaiBAH76313; BAH76313; DMR_28220.
    GeneIDi7982423.
    KEGGidma:DMR_28220.
    PATRICi21751945. VBIDesMag26496_2736.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010904 Genomic DNA. Translation: BAH76313.1 .
    RefSeqi WP_015861478.1. NC_012796.1.
    YP_002954199.1. NC_012796.1.

    3D structure databases

    ProteinModelPortali C4XH10.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 573370.DMR_28220.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAH76313 ; BAH76313 ; DMR_28220 .
    GeneIDi 7982423.
    KEGGi dma:DMR_28220.
    PATRICi 21751945. VBIDesMag26496_2736.

    Phylogenomic databases

    eggNOGi COG0538.
    HOGENOMi HOG000021113.
    KOi K00031.
    OMAi CLRPIRY.
    OrthoDBi EOG6SNDTP.

    Enzyme and pathway databases

    BioCyci DMAG573370:GHJL-2851-MONOMER.

    Family and domain databases

    Gene3Di 3.40.718.10. 1 hit.
    InterProi IPR019818. IsoCit/isopropylmalate_DH_CS.
    IPR001804. Isocitrate/isopropylmalate_DH.
    IPR024084. IsoPropMal-DH-like_dom.
    [Graphical view ]
    PANTHERi PTHR11835. PTHR11835. 1 hit.
    Pfami PF00180. Iso_dh. 1 hit.
    [Graphical view ]
    PROSITEi PS00470. IDH_IMDH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
      Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
      Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700980 / DSM 13731 / RS-1Imported.

    Entry informationi

    Entry nameiC4XH10_DESMR
    AccessioniPrimary (citable) accession number: C4XH10
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3