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C4XH10

- C4XH10_DESMR

UniProt

C4XH10 - C4XH10_DESMR

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Protein
Isocitrate dehydrogenase [NADP]
Gene
icd, DMR_28220
Organism
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. NAD binding Source: InterPro
  2. isocitrate dehydrogenase (NADP+) activity Source: UniProtKB-EC
  3. magnesium ion binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Enzyme and pathway databases

BioCyciDMAG573370:GHJL-2851-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Isocitrate dehydrogenase [NADP]UniRule annotation (EC:1.1.1.42UniRule annotation)
Gene namesi
Name:icdImported
Ordered Locus Names:DMR_28220Imported
OrganismiDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)Imported
Taxonomic identifieri573370 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000009071: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi573370.DMR_28220.

Structurei

3D structure databases

ProteinModelPortaliC4XH10.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0538.
HOGENOMiHOG000021113.
KOiK00031.
OMAiCLRPIRY.
OrthoDBiEOG6SNDTP.

Family and domain databases

Gene3Di3.40.718.10. 1 hit.
InterProiIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERiPTHR11835. PTHR11835. 1 hit.
PfamiPF00180. Iso_dh. 1 hit.
[Graphical view]
PROSITEiPS00470. IDH_IMDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C4XH10-1 [UniParc]FASTAAdd to Basket

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MEKTVFWIEG DGIGPDVWKA GRPVLDAAVD KAYGGARKLV WKELLAGEKA    50
FKEVGEYLPQ ATVEALTTAE LAFKGPLGTP VGGGFRSLNV TLRQVLDLYA 100
CIRPIRYFQG IESPVKRPDL VDMIIFRENT EDVYAGIEYA TGTPEAKRLI 150
AFLRDELGAK VDETAGIGIK PITPAGSKRL VRKAIQHAVD HKKPSVTLVH 200
KGNIMKYTEG AFRAFGYEVA AQEFAAQCMT EQDAAAGGTK PIVVKDRIAD 250
NMFQVALMRP QDYSVIATTN LNGDYISDAL AAQVGGLGLA PGVNMSEKLA 300
FFEPTHGTAP GIAGKDKANP GSLILSGAML LEHLGWHEAA KLIHDSMDKT 350
ISEKKVTVDL ADQIPGATTI GCAAFGELLA KNL 383
Length:383
Mass (Da):41,109
Last modified:July 28, 2009 - v1
Checksum:iF21089CA0C891D98
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010904 Genomic DNA. Translation: BAH76313.1.
RefSeqiWP_015861478.1. NC_012796.1.
YP_002954199.1. NC_012796.1.

Genome annotation databases

EnsemblBacteriaiBAH76313; BAH76313; DMR_28220.
GeneIDi7982423.
KEGGidma:DMR_28220.
PATRICi21751945. VBIDesMag26496_2736.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010904 Genomic DNA. Translation: BAH76313.1 .
RefSeqi WP_015861478.1. NC_012796.1.
YP_002954199.1. NC_012796.1.

3D structure databases

ProteinModelPortali C4XH10.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 573370.DMR_28220.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAH76313 ; BAH76313 ; DMR_28220 .
GeneIDi 7982423.
KEGGi dma:DMR_28220.
PATRICi 21751945. VBIDesMag26496_2736.

Phylogenomic databases

eggNOGi COG0538.
HOGENOMi HOG000021113.
KOi K00031.
OMAi CLRPIRY.
OrthoDBi EOG6SNDTP.

Enzyme and pathway databases

BioCyci DMAG573370:GHJL-2851-MONOMER.

Family and domain databases

Gene3Di 3.40.718.10. 1 hit.
InterProi IPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view ]
PANTHERi PTHR11835. PTHR11835. 1 hit.
Pfami PF00180. Iso_dh. 1 hit.
[Graphical view ]
PROSITEi PS00470. IDH_IMDH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria."
    Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., Matsunaga T.
    Genome Res. 19:1801-1808(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700980 / DSM 13731 / RS-1.

Entry informationi

Entry nameiC4XH10_DESMR
AccessioniPrimary (citable) accession number: C4XH10
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: September 3, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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