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C4V7S3 (C4V7S3_NOSCE) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:NCER_100511 EMBL EEQ82740.1
OrganismNosema ceranae (strain BRL01) (Microsporidian parasite) [Complete proteome]
Taxonomic identifier578460 [NCBI]
Taxonomic lineageEukaryotaFungiMicrosporidiaNosematidaeNosema

Protein attributes

Sequence length592 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
C4V7S3 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: F712EDDBEDD29EB3

FASTA59268,957
        10         20         30         40         50         60 
MENEIKPNSF LYFSKIMEKI SQRSGRIEIQ DMLTEYFRDV ISINKNDLIY VIYLCTHTIY 

        70         80         90        100        110        120 
PEYKNQQLNL GEKILFDVLK ECTSKDITIL KKEYTKIGDF GTIGMTYRTR QLFISKKTLS 

       130        140        150        160        170        180 
AKDVVYALRE IAEISGIKSR IYKIRKMLDL ISSCTPIEIK FLFRLFEENL KVKFALKTVL 

       190        200        210        220        230        240 
AAFAKLYDSA YIDKIKEAYN RRPDIEQLVI EILTNGISTV DTNFNIEPGI PLKPMLAQPT 

       250        260        270        280        290        300 
KNISTAFKRV ENKKFTCENK YDGERIQIHR HNNQMTLYSR NLENTTDKYF DIIIKSNTDK 

       310        320        330        340        350        360 
DFVIDGEVVA YDPEQKKILT FQKLSTRKRK DFSKKETVNV CVFVFDILYF DGLELINKSL 

       370        380        390        400        410        420 
EDRRAILHKE FTEVEGKFFF SEFKDCENIE EVDEFFRQSI NSQYEGIMIK LLGDGSNYIP 

       430        440        450        460        470        480 
SQRCNSWIKL KKDYIESGSD SFDLVVVGAY YGKGKRTGWY GGFLLASYNE NDEMFETVCK 

       490        500        510        520        530        540 
IGTGFDDSLL SKLYEEVNNY VVSIPSRVKY KEQTKPDVWI TPKFVWEIKA AAVSASPIYC 

       550        560        570        580        590 
CGIDIEEKGF SLRFPRFLNE REDKDVTDAT TSLQIVMNYK EYEGESKVLD DI 

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References

[1]"Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees."
Cornman R.S., Chen Y.P., Schatz M.C., Street C., Zhao Y., Desany B., Egholm M., Hutchison S., Pettis J.S., Lipkin W.I., Evans J.D.
PLoS Pathog. 5:E1000466-E1000466(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BRL01.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
ACOL01000027 Genomic DNA. Translation: EEQ82740.1.
RefSeqXP_002996411.1. XM_002996365.1.

3D structure databases

ProteinModelPortalC4V7S3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9422802.
KEGGnce:NCER_100511.

Organism-specific databases

EuPathDBMicrosporidiaDB:NCER_100511.

Phylogenomic databases

KOK10747.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC4V7S3_NOSCE
AccessionPrimary (citable) accession number: C4V7S3
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: November 13, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)