Lumazine protein - Photobacterium kishitanii

Preferred order of sections

Names and origin

Protein names

Submitted name:
Lumazine protein EMBL BAH78735.1

Gene names

Name:

lump EMBL BAH78735.1

Organism

Photobacterium kishitanii EMBL BAH78735.1

Taxonomic identifier

318456 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Photobacterium

Protein attributes

Sequence length	177 AA.
Sequence status	Fragment.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	FMN PDB 3A3B Flavoprotein PDB 3A3B Nucleotide-binding PDB 3A3B
Technical term	3D-structure PDB 3A3B PDB 3A3G PDB 3A35
Gene Ontology (GO)
Biological_process	riboflavin biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: UniProtKB-KW oxidoreductase activity Inferred from electronic annotation. Source: InterPro riboflavin synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

41 – 43

3

FMN PDB 3A3B

Nucleotide binding

55 – 62

8

FMN PDB 3A3B

Nucleotide binding

93 – 95

3

FMN PDB 3A3B

Experimental info

Non-terminal residue

Non-terminal residue

1

Sequences

Sequence

Length

Mass (Da)

Tools

C4TPG1 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: F806F5733D9481E1
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FASTA

177

19,355

        10         20         30         40         50         60 
GAGIIKKISK NDDTQRHGIT FPKDILESVE KGTVMLVNGC SLTVVRISGD VVYFDIDQAI 

        70         80         90        100        110        120 
NTTTFRELEV GNKVNLEVRP EFGSLLGKGA LTGNIKGVAT VDNITEEEDR LKVYIKIPKD 

       130        140        150        160        170 
LIENILSEDH IGINGVSHSI EEISDDIIFI NYPKNLSITT NLGTLEKGSD VNVETLN

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References

[1]

"Crystal structures of the lumazine protein from Photobacterium kishitanii in complexes with the authentic chromophore, 6,7-dimethyl-8-(1'-D-ribityl) lumazine, and its analogues, riboflavin and flavin mononucleotide, at high resolution."
Sato Y., Shimizu S., Ohtaki A., Noguchi K., Miyatake H., Dohmae N., Sasaki S., Odaka M., Yohda M.
J. Bacteriol. 192:127-133(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB508352 Genomic DNA. Translation: BAH78735.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3A35	X-ray	1.42	A/B	1-177	[»]
3A3B	X-ray	2.00	A/B	1-177	[»]
3A3G	X-ray	2.00	A/B	1-177	[»]

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

Gene3D

2.40.30.20. 2 hits.

InterPro

IPR023366. ATPase_F1/A1-cplx_a_su_N.
IPR001783. Lumazine-bd.
IPR026017. Lumazine-bd_dom.
IPR017938. Riboflavin_synthase-like_b-brl.
[Graphical view]

PANTHER

PTHR21098. PTHR21098. 1 hit.

Pfam

PF00677. Lum_binding. 2 hits.
[Graphical view]

SUPFAM

SSF63380. Riboflavin_synthase_like_b-brl. 2 hits.

PROSITE

PS51177. LUMAZINE_BIND. 2 hits.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

C4TPG1.

Entry information

Entry name

C4TPG1_9GAMM

Accession

Primary (citable) accession number: C4TPG1

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	March 6, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)