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Protein
Submitted name:

RNA polymerase II third largest subunit B44, part of central core

Gene

PAS_chr4_0344

Organism
Komagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi82Zinc; via carbonyl oxygenCombined sources1
Metal bindingi85ZincCombined sources1
Metal bindingi87ZincCombined sources1
Metal bindingi91ZincCombined sources1
Metal bindingi94ZincCombined sources1

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase II third largest subunit B44, part of central coreImported
Gene namesi
Ordered Locus Names:PAS_chr4_0344Imported
OrganismiKomagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)Imported
Taxonomic identifieri644223 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesPhaffomycetaceaeKomagataella
Proteomesi
  • UP000000314 Componenti: Chromosome 4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi644223.XP_002493766.1.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5X4ZX-ray7.80C/O1-304[»]
5X50X-ray4.29C1-304[»]
5X51X-ray7.00C/O1-304[»]
5XOGX-ray3.00C1-304[»]
5XONelectron microscopy3.83C1-304[»]
ProteinModelPortaliC4R7L2.
SMRiC4R7L2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini16 – 261RPOLDInterPro annotationAdd BLAST246

Phylogenomic databases

eggNOGiKOG1522. Eukaryota.
COG0202. LUCA.
HOGENOMiHOG000230844.
InParanoidiC4R7L2.
KOiK03011.
OMAiMAIDWVQ.
OrthoDBiEOG092C3EZ0.

Family and domain databases

Gene3Di2.170.120.12. 1 hit.
3.30.1360.10. 1 hit.
InterProiView protein in InterPro
IPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
IPR011262. DNA-dir_RNA_pol_insert.
IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
IPR036603. RBP11-like.
IPR036643. RNApol_insert_sf.
PfamiView protein in Pfam
PF01000. RNA_pol_A_bac. 1 hit.
PF01193. RNA_pol_L. 1 hit.
SMARTiView protein in SMART
SM00662. RPOLD. 1 hit.
SUPFAMiSSF55257. SSF55257. 2 hits.
SSF56553. SSF56553. 1 hit.
PROSITEiView protein in PROSITE
PS00446. RNA_POL_D_30KD. 1 hit.

Sequencei

Sequence statusi: Complete.

C4R7L2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKEPKVNII NAQDDEVELM LSDVNLSLAN SLRRTMLAEV PTLAIDLVEI
60 70 80 90 100
KMNTSVLADE FISHRLGLIP LVSEDVEEMK YSRDCTCEDY CDECSVVLEL
110 120 130 140 150
SARHEGEEGT TDVYSSSLIK VSGPGNLNVG EPVRRDDYDQ GILLCKLRNH
160 170 180 190 200
QELNIRCIAK KGIAKEHAKW SPCSAIAFEY DPHNKLKHTD FWFEVDAKKE
210 220 230 240 250
WPDSKYATWE EPPKPGEVFD YKAKPNRFYM TVETTGSLKA NQVFSRGIKT
260 270 280 290 300
LQEKLANVLF ELENSRPANT TAYGGATAYG GQTVYGRETS YGGNTNYGDY

NAPY
Length:304
Mass (Da):34,176
Last modified:July 7, 2009 - v1
Checksum:i817B5BA131241412
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN392322 Genomic DNA. Translation: CAY71587.1.
RefSeqiXP_002493766.1. XM_002493721.1.

Genome annotation databases

EnsemblFungiiCAY71587; CAY71587; PAS_chr4_0344.
GeneIDi8200785.
KEGGippa:PAS_chr4_0344.

Similar proteinsi

Entry informationi

Entry nameiC4R7L2_KOMPG
AccessioniPrimary (citable) accession number: C4R7L2
Entry historyiIntegrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: October 25, 2017
This is version 56 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported