Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

RNA polymerase II transcription factor B subunit 2

Gene

PAS_chr4_0238

Organism
Komagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processDNA damage, DNA repairUniRule annotation, Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase II transcription factor B subunit 2UniRule annotation
Gene namesi
Ordered Locus Names:PAS_chr4_0238Imported
OrganismiKomagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)Imported
Taxonomic identifieri644223 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesPhaffomycetaceaeKomagataella
Proteomesi
  • UP000000314 Componenti: Chromosome 4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi644223.XP_002493646.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the TFB2 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3471. Eukaryota.
COG5144. LUCA.
HOGENOMiHOG000170529.
InParanoidiC4R792.
KOiK03144.
OMAiECILHYL.
OrthoDBiEOG092C3703.

Family and domain databases

InterProiView protein in InterPro
IPR004598. TFIIH_p52/Tfb2.
PANTHERiPTHR13152. PTHR13152. 1 hit.
PfamiView protein in Pfam
PF03849. Tfb2. 1 hit.
TIGRFAMsiTIGR00625. tfb2. 1 hit.

Sequencei

Sequence statusi: Complete.

C4R792-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDSSNLLKT TVNDYLENLP ESVHNKLYQS SITCLAIFRL LPSLAKFYVM
60 70 80 90 100
SLLFNEHSVS YIDLTRWIRP DNMTHLVSSS TKSSSSSAVT NFPGAIGKNK
110 120 130 140 150
MYQNECLKRL KQLNLIKDVR KQWTNPNTGQ LTNVVVLQLN PMFRKNFRNA
160 170 180 190 200
LTGSQMSNDL NNDIEMTDVE EVSEEFLDRY SLMKWENILH FMVGSEVPEL
210 220 230 240 250
PSIGVLSLLR HSGLMDIGEE NEFIATPKRF KGDNMDLKSM KITQDGFQFL
260 270 280 290 300
LQDINAQIWQ LLLQYLRMSE KLMMNPVDVL NFIFMLGSLE LGKQYPVTLL
310 320 330 340 350
SDTQVIMLED LVDYGLIYYP EKNRYFYPTR MATTLTSEKT TFKTASMSMN
360 370 380 390 400
QVLEGGPEVK DHGSIVLETN FKLYCYTTSP LQIAILNLFV HLRTRFANMV
410 420 430 440 450
TGMITRESVR EALRNGITAD QIIKYLETHA HSQMKKLAEE KLLKKLEFDS
460 470 480 490 500
NATETQQIGS QVKLEVIPPT VVDQIKLWQL EMDRLQTFAG FLFKDFANAQ
510 520 530 540
EFEQLANYAD EVGVMLWRDD DKRKFFVTEE GIGQLNDYAN RLKRHRA
Length:547
Mass (Da):63,047
Last modified:July 7, 2009 - v1
Checksum:iD7820D8F61C9B16D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN392322 Genomic DNA. Translation: CAY71467.1.
RefSeqiXP_002493646.1. XM_002493601.1.

Genome annotation databases

EnsemblFungiiCAY71467; CAY71467; PAS_chr4_0238.
GeneIDi8200907.
KEGGippa:PAS_chr4_0238.

Similar proteinsi

Entry informationi

Entry nameiC4R792_KOMPG
AccessioniPrimary (citable) accession number: C4R792
Entry historyiIntegrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: June 7, 2017
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported