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C4R6J3 (C4R6J3_PICPG) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length744 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
C4R6J3 [UniParc].

Last modified July 7, 2009. Version 1.
Checksum: DDA84A811C6FBD3B

FASTA74483,945
        10         20         30         40         50         60 
MTHCGPLLFP NLDLSRNLSK RLFLCYISYY NCFIMSGQQS LNRFFSARKP EIVNSTSKKL 

        70         80         90        100        110        120 
ISQKRTTETD YSPLKRTKNS TMLECGDLNS PHLAKVGYPD LEKDTVDSNI LVEAESLLKL 

       130        140        150        160        170        180 
ESKYHSDSPD LPQSQEIFYS SLTNIFEKLE QEPARLKNLA IASEFFLQIL RSNHKRTLVE 

       190        200        210        220        230        240 
VIYLMINRLG PDYELDLELG LGETLLVKAI AEGTGRTPQR IRSELHKLGD IGLVAQNSRS 

       250        260        270        280        290        300 
RQPTMFKSKP LTIHSVFENL TKIAKSSGNA SQARKIGLIN QMLTTCEGSE AKFLMRSLEG 

       310        320        330        340        350        360 
KLRINFGEKS VLVALSKAFS EYEHELSSKK GHVSPQELVD AEEAIKKAFS QIPNYEIIVD 

       370        380        390        400        410        420 
EALKYGISNL ATHCTLKPGI PLKPMLAKPT KSITEVLDHF HGQEFTCEYK YDGERAQLHV 

       430        440        450        460        470        480 
QEDGTVKIYS RNSEDMSQRY PDLIDVVSQI KTQCNGVITL ILDCECVAWD GEKGKILPFQ 

       490        500        510        520        530        540 
VLSTRKRKDV NAKDIKVQVC LFAFDILFLN GKSLLELPLK ERRKILHENV KPIEGKFQFA 

       550        560        570        580        590        600 
EAMDADNVAE IQHFLDQSVK DSCEGLMVKM LDGDKSHYEP SKRSVNWLKL KKDYLEGVGD 

       610        620        630        640        650        660 
SLDLAVVGGY IGKGKRTGWY GGFLLACYNE DSGEYETCCK IGTGFSEEML QTLSGTLKPT 

       670        680        690        700        710        720 
VIQQPKPFYV YDASPDVWFE PTLVFEVLTA DLSLSPVYKA GINFFGKGVS LRFPRFIRVR 

       730        740 
DDKSPEQATS SDQIVELYQK QAHV 

« Hide

References

[1]"Genome sequence of the recombinant protein production host Pichia pastoris."
De Schutter K., Lin Y.-C., Tiels P., Van Hecke A., Glinka S., Weber-Lehmann J., Rouze P., Van de Peer Y., Callewaert N.
Nat. Biotechnol. 27:561-566(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GS115 / ATCC 20864.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN392321 Genomic DNA. Translation: CAY71179.1.
RefSeqXP_002493358.1. XM_002493313.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING644223.PAS_chr3_1112.

Proteomic databases

ProMEXC4R6J3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiCAY71179; CAY71179; PAS_chr3_1112.
GeneID8200069.
KEGGppa:PAS_chr3_1112.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036006.
KOK10747.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC4R6J3_PICPG
AccessionPrimary (citable) accession number: C4R6J3
Entry history
Integrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: January 22, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)