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Protein
Submitted name:

RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III

Gene

PAS_chr3_0157

Organism
Komagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and IIIImported
Gene namesi
Ordered Locus Names:PAS_chr3_0157Imported
OrganismiKomagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)Imported
Taxonomic identifieri644223 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesPhaffomycetaceaeKomagataella
Proteomesi
  • UP000000314 Componenti: Chromosome 3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi644223.XP_002492363.1.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5X4ZX-ray7.80E/Q1-214[»]
5X50X-ray4.29E1-214[»]
5X51X-ray7.00E/Q1-214[»]
5XOGX-ray3.00E1-214[»]
5XONelectron microscopy3.83E1-214[»]
ProteinModelPortaliC4R3P8.
SMRiC4R3P8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 98RNA_pol_Rpb5_NInterPro annotationAdd BLAST92
Domaini141 – 213RNA_pol_Rpb5_CInterPro annotationAdd BLAST73

Phylogenomic databases

eggNOGiKOG3218. Eukaryota.
COG2012. LUCA.
HOGENOMiHOG000205213.
InParanoidiC4R3P8.
KOiK03013.
OMAiNQLMRIQ.
OrthoDBiEOG092C4CGV.

Family and domain databases

Gene3Di3.40.1340.10. 1 hit.
3.90.940.20. 1 hit.
HAMAPiMF_00025. RNApol_RpoH_RPB5. 1 hit.
InterProiView protein in InterPro
IPR014381. DNA_RNA_pol_RPB5_euk/virus.
IPR005571. RNA_pol_Rpb5_N.
IPR036710. RNA_pol_Rpb5_N_sf.
IPR000783. RNA_pol_subH/Rpb5_C.
IPR020608. RNA_pol_subH/Rpb5_CS.
IPR035913. RPB5-like.
IPR020609. RpoH/RPB5.
PfamiView protein in Pfam
PF01191. RNA_pol_Rpb5_C. 1 hit.
PF03871. RNA_pol_Rpb5_N. 1 hit.
PIRSFiPIRSF000747. RPB5. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005155. RNA_pol_subH/Rpb5_C. 1 hit.
SUPFAMiSSF53036. SSF53036. 1 hit.
SSF55287. SSF55287. 1 hit.
PROSITEiView protein in PROSITE
PS01110. RNA_POL_H_23KD. 1 hit.

Sequencei

Sequence statusi: Complete.

C4R3P8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDNNRIISR LWRSFRTVKE MAADRGYFIS QEEMDQSLEE FRSKICDSMG
60 70 80 90 100
NPQRKLMSFL ANPTPEALEK YSDLGTLWVE FCDEPSVGIK TMRNFCLRIQ
110 120 130 140 150
EKNFSTGIFI YQNNITPSAN KMIPTVSPAI IETFQESDLV VNITHHELVP
160 170 180 190 200
KHIRLSDGEK SQLLQRYKLK ESQLPRIQRE DPVARYLGLK RGQVVKIIRR
210
SETSGRYASY RICL
Length:214
Mass (Da):24,928
Last modified:July 7, 2009 - v1
Checksum:iD3C801961F5642AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN392321 Genomic DNA. Translation: CAY70112.1.
RefSeqiXP_002492363.1. XM_002492318.1.

Genome annotation databases

EnsemblFungiiCAY70112; CAY70112; PAS_chr3_0157.
GeneIDi8199432.
KEGGippa:PAS_chr3_0157.

Similar proteinsi

Entry informationi

Entry nameiC4R3P8_KOMPG
AccessioniPrimary (citable) accession number: C4R3P8
Entry historyiIntegrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: October 25, 2017
This is version 57 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported