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C4Q5J8 (C4Q5J8_SCHMA) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=1.1.1.8 EMBL CAZ30729.1
Gene names
ORF Names:Smp_030500.1 EMBL CAZ30729.1
OrganismSchistosoma mansoni (Blood fluke) [Reference proteome]
Taxonomic identifier6183 [NCBI]
Taxonomic lineageEukaryotaMetazoaPlatyhelminthesTrematodaDigeneaStrigeididaSchistosomatoideaSchistosomatidaeSchistosoma

Protein attributes

Sequence length351 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. RuleBase RU000437

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region271 – 2722Substrate binding By similarity PIRSR PIRSR000114-2

Sites

Active site2051Proton acceptor By similarity PIRSR PIRSR000114-1
Binding site1201Substrate By similarity PIRSR PIRSR000114-2

Sequences

Sequence LengthMass (Da)Tools
C4Q5J8 [UniParc].

Last modified July 7, 2009. Version 1.
Checksum: 89E97E9CF48A253B

FASTA35138,861
        10         20         30         40         50         60 
MSLRRVSVIG SGNWGSTIAK IVGNNIKKFP EYVPEVRMWV FEELVNGRKL TEIINTSHEN 

        70         80         90        100        110        120 
VKYLPNVKLP ENVVADPDVK SVARDADVLI IVMPHQFLNR TLAEMKPVVK PTSYAISLMK 

       130        140        150        160        170        180 
GLALSDDHGI KLLTDCIRDV LSIPCAVLMG ANLATEVSQE NYCEATIGID NPKMGSELKK 

       190        200        210        220        230        240 
LFQTDYFRIV VIKDEVATEL CGALKNIVAV AAGVIEGLGY GDNTKAAVIR LGFMEMKSFI 

       250        260        270        280        290        300 
YQFFADRHPQ EGTFLESCGV ADLITTCYGG RNKQMGIALA TTNEPLAQLE KERLHGQSAQ 

       310        320        330        340        350 
GPLTAAEVYA MLERKGLLEK YPIFTAVHKL CTRQFDPKNF ICCLANHPEH R 

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References

[1]"A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni."
Protasio A.V., Tsai I.J., Babbage A., Nichol S., Hunt M., Aslett M.A., De Silva N., Velarde G.S., Anderson T.J., Clark R.C., Davidson C., Dillon G.P., Holroyd N.E., LoVerde P.T., Lloyd C., McQuillan J., Oliveira G., Otto T.D. expand/collapse author list , Parker-Manuel S.J., Quail M.A., Wilson R.A., Zerlotini A., Dunne D.W., Berriman M.
PLoS Negl. Trop. Dis. 6:E1455-E1455(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Puerto Rican.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CABG01000123 Genomic DNA. Translation: CAZ30729.1.
RefSeqXP_002574496.1. XM_002574450.1.
UniGeneSma.8902.

3D structure databases

ProteinModelPortalC4Q5J8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaSmp_030500.1; Smp_030500.1:pep; Smp_030500.
GeneID8349719.
KEGGsmm:Smp_030500.1.

Organism-specific databases

CTD8349719.

Phylogenomic databases

HOGENOMHOG000246855.
KOK00006.
OMAQICFNGH.
PhylomeDBC4Q5J8.

Family and domain databases

Gene3D1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProIPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR017751. G3P_DH_NAD-dep_euk.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERPTHR11728. PTHR11728. 1 hit.
PfamPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PIRSFPIRSF000114. Glycerol-3-P_dh. 1 hit.
PRINTSPR00077. GPDHDRGNASE.
SUPFAMSSF48179. SSF48179. 1 hit.
TIGRFAMsTIGR03376. glycerol3P_DH. 1 hit.
PROSITEPS00957. NAD_G3PDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC4Q5J8_SCHMA
AccessionPrimary (citable) accession number: C4Q5J8
Entry history
Integrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: January 22, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)