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C4LB04 (C4LB04_TOLAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulose-phosphate 3-epimerase PIRNR PIRNR001461
EC=5.1.3.1 PIRNR PIRNR001461
Gene names
Ordered Locus Names:Tola_2613
OrganismTolumonas auensis (strain DSM 9187 / TA4) [Complete proteome] [HAMAP] EMBL ACQ94207.1
Taxonomic identifier595494 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Aeromonadales › Aeromonadaceae › Tolumonas ›

Protein attributes

Sequence length226 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-ribulose 5-phosphate = D-xylulose 5-phosphate. PIRNR PIRNR001461

Cofactor

Binds 1 divalent metal cation per subunit. Active with Co2+, Mn2+ and Zn2+ By similarity. PIRSR PIRSR001461-2

Sequence similarities

Belongs to the ribulose-phosphate 3-epimerase family. PIRNR PIRNR001461

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region146 – 1494Substrate binding By similarity PIRSR PIRSR001461-3
Region201 – 2022Substrate binding By similarity PIRSR PIRSR001461-3

Sites

Active site381Proton acceptor By similarity PIRSR PIRSR001461-1
Active site1791Proton donor By similarity PIRSR PIRSR001461-1
Metal binding361Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding381Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding701Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding1791Divalent metal cation By similarity PIRSR PIRSR001461-2
Binding site111Substrate By similarity PIRSR PIRSR001461-3
Binding site701Substrate By similarity PIRSR PIRSR001461-3
Binding site1811Substrate; via amide nitrogen By similarity PIRSR PIRSR001461-3

Sequences

Sequence LengthMass (Da)Tools
C4LB04 [UniParc].

Last modified July 7, 2009. Version 1.
Checksum: 949E1FF27D4C165F

FASTA22624,666
        10         20         30         40         50         60 
MNMKPYLIAP SILSADFARL GEDVANVLAA GADVVHFDVM DNHYVPNLTI GPMVCKALRD 

        70         80         90        100        110        120 
YGITAPIDVH LMVKPVDRII PDFAKAGASI ITFHPEASEH PDRTLQLIKE HGCQAGLVLN 

       130        140        150        160        170        180 
PATSLHYLDH VMDKLDIILL MSVNPGFGGQ SFIPATLDKL RQVRQRIQQS GRDIRLEVDG 

       190        200        210        220 
GVKTDNIRQI ADAGADMFVA GSAIFDQPDY AAVIARMRQE LDSANV

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References

[1]"Complete sequence of Tolumonas auensis DSM 9187."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Spring S., Beller H.
Submitted (MAY-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 9187 / TA4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001616 Genomic DNA. Translation: ACQ94207.1.
RefSeqYP_002893793.1. NC_012691.1.

3D structure databases

ProteinModelPortalC4LB04.
ModBaseSearch...

Protein-protein interaction databases

STRING595494.Tola_2613.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACQ94207; ACQ94207; Tola_2613.
GeneID7883464.
KEGGtau:Tola_2613.
PATRIC23981897. VBITolAue42623_2597.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0036.
HOGENOMHOG000259347.
KOK01783.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
InterProIPR013785. Aldolase_TIM.
IPR026019. Ribul_P_3_epim.
IPR000056. Ribul_P_3_epim-like.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PANTHERPTHR11749. PTHR11749. 1 hit.
PfamPF00834. Ribul_P_3_epim. 1 hit.
[Graphical view]
PIRSFPIRSF001461. RPE. 1 hit.
SUPFAMSSF51366. RibP_bind_barrel. 1 hit.
TIGRFAMsTIGR01163. rpe. 1 hit.
PROSITEPS01085. RIBUL_P_3_EPIMER_1. 1 hit.
PS01086. RIBUL_P_3_EPIMER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC4LB04_TOLAT
AccessionPrimary (citable) accession number: C4LB04
Entry history
Integrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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