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Protein

Putative HTH-type transcriptional regulatory protein M164_1268

Gene

M164_1268

Organism
Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi136 – 15520H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciSISL426118:GI01-1296-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulatory protein M164_1268UniRule annotation
Gene namesi
Ordered Locus Names:M164_1268
OrganismiSulfolobus islandicus (strain M.16.4 / Kamchatka #3)
Taxonomic identifieri426118 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001479 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 310310Putative HTH-type transcriptional regulatory protein M164_1268PRO_1000212143Add
BLAST

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini125 – 18056HTH cro/C1-typeUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000270967.
KOiK07728.
OMAiKTIYDYE.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C4KH08-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKKIINEVI DILEDKKYTY TMIEYPEHNR KSVDIVLNSK EPTLIRVSED
60 70 80 90 100
KVTKEEISDL KKIAVSTLTA SLVVTNEEEE DIVSVKADNV FAVSPEGFKK
110 120 130 140 150
VINGEKIFLY RTRGGIFIKI RNYILKHKRE EMGYSIGDVA KFLGVSRKAI
160 170 180 190 200
YDYEKGDSDV SLEVAEKLID LFGDDIIGDV IWDSIKGKKE VIEEDITEFS
210 220 230 240 250
PESFKSKLIY KLKENGLNIL SLKLTAADLI VKDNENNRYL VTIENKDYNK
260 270 280 290 300
SMKKFYEAKK LASYTKSELL IIIRTSKMLK ECEDLGYKTY EENDIHSLID
310
EIKGSNGRQS
Length:310
Mass (Da):35,558
Last modified:July 7, 2009 - v1
Checksum:i71AB75E2F2DC5B5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001402 Genomic DNA. Translation: ACR41872.1.
RefSeqiWP_012711291.1. NC_012726.1.

Genome annotation databases

EnsemblBacteriaiACR41872; ACR41872; M164_1268.
GeneIDi7812543.
KEGGisid:M164_1268.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001402 Genomic DNA. Translation: ACR41872.1.
RefSeqiWP_012711291.1. NC_012726.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACR41872; ACR41872; M164_1268.
GeneIDi7812543.
KEGGisid:M164_1268.

Phylogenomic databases

HOGENOMiHOG000270967.
KOiK07728.
OMAiKTIYDYE.

Enzyme and pathway databases

BioCyciSISL426118:GI01-1296-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1268_SULIK
AccessioniPrimary (citable) accession number: C4KH08
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: July 7, 2009
Last modified: November 11, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.