Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

C4K4T9 (C4K4T9_HAMD5) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:mrcB EMBL ACQ67582.1
Ordered Locus Names:HDEF_0862 EMBL ACQ67582.1
OrganismHamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) [Complete proteome] [HAMAP] EMBL ACQ67582.1
Taxonomic identifier572265 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeaphid secondary symbiontsCandidatus Hamiltonella

Protein attributes

Sequence length793 AA.
Sequence statusComplete.
Protein existencePredicted

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site2031Proton donor; for transglycosylase activity By similarity PIRSR PIRSR002799-1
Active site4811Acyl-ester intermediate; for transpeptidase activity By similarity PIRSR PIRSR002799-1

Sequences

Sequence LengthMass (Da)Tools
C4K4T9 [UniParc].

Last modified July 7, 2009. Version 1.
Checksum: E2405417100E3143

FASTA79389,165
        10         20         30         40         50         60 
MSHYGHEPIG QKNKKIHSKL HTSIKPKHSK KKWVFLRLLF ILFLSAGLVV ILYGFYLNEK 

        70         80         90        100        110        120 
IRQRIDGQVW VLPAAVYGRM LNLEPGMAYS KKQMINLLIA TQYRKVNHLL RVGEFTVQDN 

       130        140        150        160        170        180 
SIDMLRRPFN FPDAKEDQVH ARLLFHNDRL VQIENLDNQR FFGFFRLDPR LITMLQTPSG 

       190        200        210        220        230        240 
EQRLFLPRSS FPESLVNTLL AIEDRHFYQH DGINFYSIGR ALLANILAGR TVQGGSTLTQ 

       250        260        270        280        290        300 
QLVKNLFLNN QRSFWRKANE AYMAILIDHH YSKDKILELY FNEVYLGQNG NDQIRGFPLA 

       310        320        330        340        350        360 
SLYYFGRPVD ELSLDQQAML VGMVKGASLY NPWRNPEFTL ERRNLVLKLL QNQGNIDEKL 

       370        380        390        400        410        420 
YHTLSTRPLD VQPKGGVIVP QPAFIEMVRQ ELKQKLGDKA QHLSGAKIFT TMDPVSQDAA 

       430        440        450        460        470        480 
EKAIESGIPA LKGSEHDLSD LEGAMVVIDR LSGEIRAIVG GSQPQFSGFN RALQARRSIG 

       490        500        510        520        530        540 
SLAKPAIYLS ALNQPHQYRF NTWLFDQPLS LELPNGSVWE PKNYSRKFRG QVMLLDGLVD 

       550        560        570        580        590        600 
SLNVPTVNLG MSIGLDQISQ TMKQLGAPAS TGPLMPSMLL GAINLTPLEV AQEYQTIASG 

       610        620        630        640        650        660 
GNKATLSALR SVIAADGSML YQSFPQSERK LSAQASYLVL YGMQEAVKRG TARSLSSEFS 

       670        680        690        700        710        720 
TFHLAGKTGT TNDLRDSWFA GIDGKEVTII WLGRDNNGPT QFTGSTGALT LYRRYLETKP 

       730        740        750        760        770        780 
PLPLISRKPA GIVDMNIDST TGHFICDTEP HNQISTIPVW TEDPDVLCKT SEKTTPPNEL 

       790 
KEKSVLDSIK NIF 

« Hide

References

[1]"Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors."
Degnan P.H., Yu Y., Sisneros N., Wing R.A., Moran N.A.
Proc. Natl. Acad. Sci. U.S.A. 106:9063-9068(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 5AT.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001277 Genomic DNA. Translation: ACQ67582.1.
RefSeqYP_002923730.1. NC_012751.1.

3D structure databases

ProteinModelPortalC4K4T9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING572265.HDEF_0862.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACQ67582; ACQ67582; HDEF_0862.
GeneID7950462.
KEGGhde:HDEF_0862.
PATRIC31973199. VBICanHam112931_0876.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0744.
KOK05365.
OMAPVWTDNP.
OrthoDBEOG6HMXCD.
ProtClustDBPRK09506.

Enzyme and pathway databases

BioCycHDEF572265:GJAB-868-MONOMER.

Family and domain databases

Gene3D3.40.710.10. 1 hit.
InterProIPR012338. Beta-lactam/transpept-like.
IPR001264. Glyco_trans_51.
IPR023346. Lysozyme-like_dom.
IPR011813. PBP_1b.
IPR001460. PCN-bd_Tpept.
IPR028166. UB2H.
[Graphical view]
PfamPF00912. Transgly. 1 hit.
PF00905. Transpeptidase. 1 hit.
PF14814. UB2H. 1 hit.
[Graphical view]
PIRSFPIRSF002799. PBP_1b. 1 hit.
SUPFAMSSF53955. SSF53955. 1 hit.
SSF56601. SSF56601. 2 hits.
TIGRFAMsTIGR02071. PBP_1b. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC4K4T9_HAMD5
AccessionPrimary (citable) accession number: C4K4T9
Entry history
Integrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: November 13, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)