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C4JRH4 (C4JRH4_UNCRE) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length1009 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
C4JRH4 [UniParc].

Last modified July 7, 2009. Version 1.
Checksum: 2049706A9DECD153

FASTA1,009115,751
        10         20         30         40         50         60 
MDGLNGPKGE TEQELDEKYP NRPRNHHPTL PFHDLFLDLF NPLNENKKRP AGSTVARRKL 

        70         80         90        100        110        120 
GPHGGQQTLS PQELRRDIIQ RFISKWRNEV GDDIYPAFRL IIPEKDRDRA MYGLKEKTIG 

       130        140        150        160        170        180 
KLLVKIMKID KNSEDGFNLL NWKLPGQSMA SRMAGDFAGR CYEVISKRPM RTEVGNMTVQ 

       190        200        210        220        230        240 
EVNEKLDLLA AANKEDEQLP ILEDFYRKMN PEELLWLIRI ILRQMKVGAT ERTFFEIWHP 

       250        260        270        280        290        300 
DAETLFSISS SLRRVCWELY NPNVRLEDEE TGVTLMQCFQ PQLAQFQMHS FQRMIEKMRL 

       310        320        330        340        350        360 
SPEDPSFWIE EKMDGERMQL HMMSDDSITG GKRFKFWSRK AKDYTYLYGN GFYDENGALT 

       370        380        390        400        410        420 
RHLKDAFADG VQNIILDGEM ITWDPEQDAP VPFGTLKTAA LSEQRNPFSA TGQRPLFRAF 

       430        440        450        460        470        480 
DILYLNDKAL TRYTLRDRRK ALEASIKPVH RRFEIHTYEV GYSAAHIEPQ LRKVVAEASE 

       490        500        510        520        530        540 
GLVLKNPDSP YRLNERHDDW MKVKPEYMTE FGESLDCVVI GGYYGSGKRG GALATFLCGL 

       550        560        570        580        590        600 
RVDEAQIRQG ANPMKCYSFC KVGGGFTAAD YANVRHHTDS KWKDWDPKKP PTEFIELAGG 

       610        620        630        640        650        660 
DAQYERPDVW IRPDESVVLC VKASSVTPSD QFRLGLTVRF PRFKRLRMDK TWESALSIQE 

       670        680        690        700        710        720 
FMDLKSNAER EQKEKEFKID NSRKRKPKRT TKKPLTIAGY DENKKAEFDV SDQIFTSKSD 

       730        740        750        760        770        780 
SLVVMTDALE PEKKSKLELE KLIKANGGKI YQTNTAASNT ICIAERRTVK VASIQKAAKE 

       790        800        810        820        830        840 
NIVRPSWLLD CIKQNEADLG LPDLLLPLEP RHMYFTVKGQ EQEISSNVDQ YSDSYVRDTT 

       850        860        870        880        890        900 
TKELTKLLAS MPAISNLSAS RISKIEDQMQ SRHEQEGTFH DLPGWLFKNQ VLYFSQSRSS 

       910        920        930        940        950        960 
SDSKVSSSRL ASNIARFAGA SLVSKPDDKR VTHIILDKDS RSADVSALRS SISKRVGAGR 

       970        980        990       1000 
IPHIVTVEWI NESWKAKTLL DEEQLLKGVH FEFRKVCIDA FYRSHISVS 

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References

[1]"Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives."
Sharpton T.J., Stajich J.E., Rounsley S.D., Gardner M.J., Wortman J.R., Jordar V.S., Maiti R., Kodira C.D., Neafsey D.E., Zeng Q., Hung C.-Y., McMahan C., Muszewska A., Grynberg M., Mandel M.A., Kellner E.M., Barker B.M., Galgiani J.N. expand/collapse author list , Orbach M.J., Kirkland T.N., Cole G.T., Henn M.R., Birren B.W., Taylor J.W.
Genome Res. 19:1722-1731(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: UAMH 1704.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CH476617 Genomic DNA. Translation: EEP80221.1.
RefSeqXP_002584374.1. XM_002584328.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8443373.
KEGGure:UREG_05063.

Phylogenomic databases

KOK10777.
OrthoDBEOG7QC84G.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC4JRH4_UNCRE
AccessionPrimary (citable) accession number: C4JRH4
Entry history
Integrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: November 13, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)