Putative uncharacterized protein - Branchiostoma floridae (Florida lancelet)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EEN43528.1

Gene names

ORF Names:

BRAFLDRAFT_237056 EMBL EEN43528.1

Organism

Branchiostoma floridae (Florida lancelet) (Amphioxus)

Taxonomic identifier

7739 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Cephalochordata › Branchiostomidae › Branchiostoma

Protein attributes

Sequence length	751 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	alanyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: InterPro alanine-tRNA ligase activity Inferred from electronic annotation. Source: InterPro nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Experimental info

Non-terminal residue

751

1

EMBL EEN43528.1

Sequences

Sequence

Length

Mass (Da)

Tools

C3ZVA7 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: A144545CF93F5F6C
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FASTA

751

83,785

        10         20         30         40         50         60 
MPQLNLTGDQ VRDMFIKYFE EKHEHLEVHS SSTIPLDDPT LLFANAGMNQ FKPIFQGTVD 

        70         80         90        100        110        120 
PSHPMAKYRR VVNSQKCIRA GGKHNDLDDV GKDVYHHTFF EMLGNWSFGD YFKKEACSWA 

       130        140        150        160        170        180 
WDLLVNGYKL EVERMYVTYF GGNEAQGLQP DLECRQIWLD LGVAEDRILP GSMKDNFWEM 

       190        200        210        220        230        240 
GEVGPCGPCS EIHYDRVGGR DASHLVNMDV PEVLEIWNLV FMQNNREPDG SITNLPKKNI 

       250        260        270        280        290        300 
DCGMGLERIL SVVQGVLSNY DTDLFTPFFD AIQKATGVRP YTGKVGADDA DGIDMAYRVL 

       310        320        330        340        350        360 
ADHARTLTIS MSDGGKPDNV GRGYVLRRIL RRGVRYATEK LNAPRGFFAS LVDVAVQTLG 

       370        380        390        400        410        420 
SAFPEITKDP QMVKDIINEE EEQFLKTLSR GRRVLEKRIT QLGDSKVVPG ETAWLLYDTY 

       430        440        450        460        470        480 
GFPVDLTSLM AEEKGLTLDC AAYEECKKQA QIRSQGKGAG VDDSVNLDVH AINELQEKGS 

       490        500        510        520        530        540 
PPTDDSPKYQ YSHDDNGNYV FQPCTATVVS LRRDKQFVQE VTQGQECGVL LDRTNFYAEQ 

       550        560        570        580        590        600 
GGQIYDEGYL VKEEDEVKRT AETEFTVKNC QVRGGYVMHI GTLVGTLNVG DKVKLFVDEA 

       610        620        630        640        650        660 
RRRPIMSNHT STHVLNFALR QVLGEADQRG SLVAPDRLRF DFSAKGAMTT AQIKEAEKIC 

       670        680        690        700        710        720 
NEIIKKNEQV YAKEAALAQA KAIQGLRAVF DETYPDPVRV LSIGISVEDM LSDPTSPAGT 

       730        740        750 
VTSVEFCGGT HLQRVGHAGD LVIVTEEAIA K

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References

[1]

"The amphioxus genome and the evolution of the chordate karyotype."
US DOE Joint Genome Institute (JGI-PGF)
Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K., Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J., Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J.

Rokhsar D.S.
Nature 453:1064-1071(2008) [PubMed: 18563158] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S238N-H82 EMBL EEN43528.1.
Tissue: Testes EMBL EEN43528.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GG666688 Genomic DNA. Translation: EEN43528.1.
RefSeq	XP_002587517.1. XM_002587471.1.
3D structure databases
ProteinModelPortal	C3ZVA7.
ModBase	Search...
Protein-protein interaction databases
STRING	C3ZVA7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7255496.
KEGG	bfo:BRAFLDRAFT_237056.
Phylogenomic databases
OMA	VILEMES.
PhylomeDB	C3ZVA7.
Family and domain databases
HAMAP	MF_00036_B. Ala_tRNA_synth_B. [Tree]
InterPro	IPR002318. Ala-tRNA-synth_IIc. IPR018162. Ala-tRNA-synth_IIc_anticod-bd. IPR018165. Ala-tRNA-synth_IIc_core. IPR018164. Ala-tRNA-synth_IIc_N. IPR023033. Ala_tRNA_synth_euk/bac. IPR018163. Thr/Ala-tRNA-synth_IIc_edit. IPR012947. tRNA_SAD. [Graphical view]
KO	K01872.
Pfam	PF01411. tRNA-synt_2c. 1 hit. PF07973. tRNA_SAD. 1 hit. [Graphical view]
PRINTS	PR00980. TRNASYNTHALA.
SMART	SM00863. tRNA_SAD. 1 hit. [Graphical view]
SUPFAM	SSF101353. Ala-tRNA-synth_IIc_anticod-bd. 1 hit. SSF55186. Thr/Ala-tRNA-synth_IIc_edit. 1 hit.
TIGRFAMs	TIGR00344. AlaS. 1 hit.
PROSITE	PS50860. AA_TRNA_LIGASE_II_ALA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3ZVA7_BRAFL

Accession

Primary (citable) accession number: C3ZVA7

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequence annotation (Features)

Experimental info

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry information