C3ZDE2 (C3ZDE2_BRAFL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EEN49497.1

Gene names

ORF Names:

BRAFLDRAFT_206700 EMBL EEN49497.1

Organism

Branchiostoma floridae (Florida lancelet) (Amphioxus) [Reference proteome]

Taxonomic identifier

7739 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Cephalochordata › Branchiostomidae › Branchiostoma

Protein attributes

Sequence length	826 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Domain	Repeat RuleBase RU003532 WD repeat RuleBase RU000362
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	C3ZDE2 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: 1A4A6771A84F231D	FASTA	826	91,839
	10 20 30 40 50 60 MAAHGGVETC FISAACNRSP FSLSWGRNGL ILYGSGNLVA VYQPKSGSVL ETLSQHTAKV 70 80 90 100 110 120 TCVRWIPKGN GEPSDEFVVG SADKSASLWR RKDSKFEVVS VLRGHSAAVT ITEAMYVPTS 130 140 150 160 170 180 NKDEFWTLLV TSSVDSTVRI WERRQGNEVT CQQTVCCGNS FALDLALSTL PTTSVPILAC 190 200 210 220 230 240 GWDDDRIHLW VRQGEAFREV ATLKGHEDWV RGVEFTANDE GDLLLASCGQ DCFIRVWKIT 250 260 270 280 290 300 LQHGEEQVTE DEIKVKEKSF SIQHGDKSQS YAVVLEAVLA GHENWIYGVH WQPAVFNDGS 310 320 330 340 350 360 RHQPLSLLSA SMDKTMILWK PDPTSGIWLD QDRVGEVGGN TLGFLGCQFS PDGQSIIAHG 370 380 390 400 410 420 FQGALHLWHH ADLTQQASWE PGVTVGGHFD GVEDIAWDPA GGEFLLSVSL DRTTRLFAPW 430 440 450 460 470 480 RREGLKPHWY ELGRPQIHGY AINCLAMVSR YQFVSGGDEK VLRVFDAPKN FLQNLKNVAR 490 500 510 520 530 540 VDISKDMVER VSNVPEGASV PALGLSNKAL YEGELSVAED ADREIPSSFS EQYPQMYYKP 550 560 570 580 590 600 SELHRPPTEE HLLQNTLWPE TQKLYGHGYE LFCVACNRQG TLVASACKAS KSEHAAILLW 610 620 630 640 650 660 DTSSWRQVGH LENHSLTVTQ LRFSHSGDML LSVSRDRTWA LFRRKPAEQA DGEDSFVRIA 670 680 690 700 710 720 YTDKKTSVHT RIIWGCSWSH DDNYFVTASR DKKVVVWGRR PDHSPAEGCL GEFCARSTTL 730 740 750 760 770 780 DVGEAATAVD FAPVLTGSKR YCLAIGKESG TVVLYCWSPA GGKEDWTLQT TIDRSNLGHC 790 800 810 820 LAVRRLAWRP TTGNTESEER NKYLQLASCG DDFTVRIFNI SVDIVT

References

[1]

"The amphioxus genome and the evolution of the chordate karyotype." US DOE Joint Genome Institute (JGI-PGF) Putnam N.H., Butts T., Ferrier D.E., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.K., Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J., Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J. , Kapitonov V.V., Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A., Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T., Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W., Satoh N., Rokhsar D.S. Nature 453:1064-1071(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S238N-H82 EMBL EEN49497.1. Tissue: Testes EMBL EEN49497.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GG666612 Genomic DNA. Translation: EEN49497.1.
RefSeq	XP_002593486.1. XM_002593440.1.
3D structure databases
ProteinModelPortal	C3ZDE2.
ModBase	Search...
Protein-protein interaction databases
STRING	7739.JGI206700.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7221866.
KEGG	bfo:BRAFLDRAFT_206700.
Phylogenomic databases
eggNOG	COG2319.
KO	K11374.
OMA	DCLIRIW.
Family and domain databases
Gene3D	2.130.10.10. 5 hits.
InterPro	IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR017986. WD40_repeat_dom. [Graphical view]
Pfam	PF00400. WD40. 7 hits. [Graphical view]
SMART	SM00320. WD40. 11 hits. [Graphical view]
SUPFAM	SSF50978. WD40_like. 3 hits.
PROSITE	PS50082. WD_REPEATS_2. 3 hits. PS50294. WD_REPEATS_REGION. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3ZDE2_BRAFL

Accession

Primary (citable) accession number: C3ZDE2

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)